Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33425

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS33415 and AZOBR_RS33420 overlap by 8 nucleotidesAZOBR_RS33420 and AZOBR_RS33425 overlap by 4 nucleotidesAZOBR_RS33425 and AZOBR_RS33430 are separated by 505 nucleotidesAZOBR_RS33430 and AZOBR_RS33435 are separated by 247 nucleotides AZOBR_RS33415: AZOBR_RS33415 - dTDP-glucose 4 6-dehydratase, at 7,398 to 8,480 _RS33415 AZOBR_RS33420: AZOBR_RS33420 - dTDP-4-dehydrorhamnose reductase, at 8,473 to 9,420 _RS33420 AZOBR_RS33425: AZOBR_RS33425 - glucose-1-phosphate thymidylyltransferase, at 9,417 to 10,283 _RS33425 AZOBR_RS33430: AZOBR_RS33430 - hypothetical protein, at 10,789 to 11,013 _RS33430 AZOBR_RS33435: AZOBR_RS33435 - hypothetical protein, at 11,261 to 12,880 _RS33435 Position (kb) 9 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 8.422 kb on - strandat 8.803 kb on + strand, within AZOBR_RS33420at 8.803 kb on + strand, within AZOBR_RS33420at 8.803 kb on + strand, within AZOBR_RS33420at 8.803 kb on + strand, within AZOBR_RS33420at 8.803 kb on + strand, within AZOBR_RS33420at 8.804 kb on - strand, within AZOBR_RS33420at 9.329 kb on - strandat 9.519 kb on + strand, within AZOBR_RS33425at 9.519 kb on + strand, within AZOBR_RS33425at 9.520 kb on - strand, within AZOBR_RS33425at 9.522 kb on + strand, within AZOBR_RS33425at 9.523 kb on - strand, within AZOBR_RS33425at 9.820 kb on - strand, within AZOBR_RS33425at 9.843 kb on + strand, within AZOBR_RS33425at 9.936 kb on + strand, within AZOBR_RS33425at 9.942 kb on + strand, within AZOBR_RS33425at 10.026 kb on + strand, within AZOBR_RS33425at 10.257 kb on + strandat 10.258 kb on - strandat 10.258 kb on - strandat 10.345 kb on + strandat 10.554 kb on + strandat 10.554 kb on + strandat 10.554 kb on + strandat 10.554 kb on + strandat 10.555 kb on - strandat 10.555 kb on - strandat 11.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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8,422 - -2.3
8,803 + AZOBR_RS33420 0.35 +0.5
8,803 + AZOBR_RS33420 0.35 -0.5
8,803 + AZOBR_RS33420 0.35 -0.6
8,803 + AZOBR_RS33420 0.35 -1.6
8,803 + AZOBR_RS33420 0.35 -0.9
8,804 - AZOBR_RS33420 0.35 +2.6
9,329 - -0.5
9,519 + AZOBR_RS33425 0.12 -0.8
9,519 + AZOBR_RS33425 0.12 +0.6
9,520 - AZOBR_RS33425 0.12 -0.8
9,522 + AZOBR_RS33425 0.12 -1.3
9,523 - AZOBR_RS33425 0.12 +1.6
9,820 - AZOBR_RS33425 0.46 -2.5
9,843 + AZOBR_RS33425 0.49 -2.8
9,936 + AZOBR_RS33425 0.60 +1.0
9,942 + AZOBR_RS33425 0.61 -1.3
10,026 + AZOBR_RS33425 0.70 -1.9
10,257 + +0.1
10,258 - -3.0
10,258 - -1.9
10,345 + +1.3
10,554 + +0.5
10,554 + +1.5
10,554 + -0.9
10,554 + +0.4
10,555 - +0.3
10,555 - -0.8
11,026 + +0.9

Or see this region's nucleotide sequence