Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29915 and AZOBR_RS29920 are separated by 6 nucleotides AZOBR_RS29920 and AZOBR_RS29925 overlap by 4 nucleotides
AZOBR_RS29915: AZOBR_RS29915 - LysR family transcriptional regulator, at 55,635 to 56,507
_RS29915
AZOBR_RS29920: AZOBR_RS29920 - conserved exported protein of unknown function, at 56,514 to 57,122
_RS29920
AZOBR_RS29925: AZOBR_RS29925 - ATP synthase, at 57,119 to 58,459
_RS29925
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1
2 at 55.569 kb on + strand at 55.616 kb on + strand at 55.617 kb on - strand at 55.627 kb on - strand at 56.127 kb on + strand, within AZOBR_RS29915 at 56.127 kb on + strand, within AZOBR_RS29915 at 56.128 kb on - strand, within AZOBR_RS29915 at 56.143 kb on - strand, within AZOBR_RS29915 at 57.276 kb on + strand, within AZOBR_RS29925 at 57.277 kb on - strand, within AZOBR_RS29925 at 57.277 kb on - strand, within AZOBR_RS29925 at 57.277 kb on - strand, within AZOBR_RS29925 at 57.312 kb on + strand at 57.313 kb on - strand, within AZOBR_RS29925 at 57.313 kb on - strand, within AZOBR_RS29925 at 57.753 kb on + strand, within AZOBR_RS29925 at 57.753 kb on + strand, within AZOBR_RS29925 at 57.753 kb on + strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925 at 57.754 kb on - strand, within AZOBR_RS29925
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 55,569 + +0.7 55,616 + +0.0 55,617 - -1.4 55,627 - -0.0 56,127 + AZOBR_RS29915 0.56 +0.3 56,127 + AZOBR_RS29915 0.56 -0.8 56,128 - AZOBR_RS29915 0.56 +2.2 56,143 - AZOBR_RS29915 0.58 -1.4 57,276 + AZOBR_RS29925 0.12 -0.9 57,277 - AZOBR_RS29925 0.12 +0.7 57,277 - AZOBR_RS29925 0.12 -0.6 57,277 - AZOBR_RS29925 0.12 -0.0 57,312 + +0.4 57,313 - AZOBR_RS29925 0.14 +0.7 57,313 - AZOBR_RS29925 0.14 -0.5 57,753 + AZOBR_RS29925 0.47 -0.6 57,753 + AZOBR_RS29925 0.47 -0.5 57,753 + AZOBR_RS29925 0.47 -0.1 57,754 - AZOBR_RS29925 0.47 -0.4 57,754 - AZOBR_RS29925 0.47 -0.7 57,754 - AZOBR_RS29925 0.47 -1.1 57,754 - AZOBR_RS29925 0.47 -0.4 57,754 - AZOBR_RS29925 0.47 +1.0 57,754 - AZOBR_RS29925 0.47 +1.3
Or see this region's nucleotide sequence