Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29415

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29410 and AZOBR_RS29415 are separated by 71 nucleotidesAZOBR_RS29415 and AZOBR_RS29420 overlap by 4 nucleotides AZOBR_RS29410: AZOBR_RS29410 - sulfonate ABC transporter substrate-binding protein, at 719,278 to 720,351 _RS29410 AZOBR_RS29415: AZOBR_RS29415 - hypothetical protein, at 720,423 to 721,124 _RS29415 AZOBR_RS29420: AZOBR_RS29420 - nitrilase, at 721,121 to 722,050 _RS29420 Position (kb) 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 719.719 kb on + strand, within AZOBR_RS29410at 719.719 kb on + strand, within AZOBR_RS29410at 719.872 kb on + strand, within AZOBR_RS29410at 719.872 kb on + strand, within AZOBR_RS29410at 719.873 kb on - strand, within AZOBR_RS29410at 719.873 kb on - strand, within AZOBR_RS29410at 720.029 kb on - strand, within AZOBR_RS29410at 720.029 kb on - strand, within AZOBR_RS29410at 720.128 kb on - strand, within AZOBR_RS29410at 720.430 kb on + strandat 720.431 kb on - strandat 720.431 kb on - strandat 720.588 kb on + strand, within AZOBR_RS29415at 720.588 kb on + strand, within AZOBR_RS29415at 721.341 kb on - strand, within AZOBR_RS29420at 721.457 kb on + strand, within AZOBR_RS29420at 721.457 kb on + strand, within AZOBR_RS29420at 721.458 kb on - strand, within AZOBR_RS29420at 721.458 kb on - strand, within AZOBR_RS29420at 721.458 kb on - strand, within AZOBR_RS29420at 721.458 kb on - strand, within AZOBR_RS29420at 721.472 kb on + strand, within AZOBR_RS29420at 721.473 kb on - strand, within AZOBR_RS29420at 721.473 kb on - strand, within AZOBR_RS29420at 721.473 kb on - strand, within AZOBR_RS29420at 721.622 kb on + strand, within AZOBR_RS29420at 721.622 kb on + strand, within AZOBR_RS29420at 721.622 kb on + strand, within AZOBR_RS29420at 721.622 kb on + strand, within AZOBR_RS29420at 721.622 kb on + strand, within AZOBR_RS29420at 721.623 kb on - strand, within AZOBR_RS29420at 721.623 kb on - strand, within AZOBR_RS29420at 721.623 kb on - strand, within AZOBR_RS29420at 721.623 kb on - strand, within AZOBR_RS29420at 721.623 kb on - strand, within AZOBR_RS29420at 721.623 kb on - strand, within AZOBR_RS29420at 721.623 kb on - strand, within AZOBR_RS29420at 721.647 kb on - strand, within AZOBR_RS29420at 721.647 kb on - strand, within AZOBR_RS29420at 721.649 kb on + strand, within AZOBR_RS29420at 721.650 kb on - strand, within AZOBR_RS29420

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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719,719 + AZOBR_RS29410 0.41 +0.3
719,719 + AZOBR_RS29410 0.41 +2.7
719,872 + AZOBR_RS29410 0.55 -0.5
719,872 + AZOBR_RS29410 0.55 -0.4
719,873 - AZOBR_RS29410 0.55 +1.8
719,873 - AZOBR_RS29410 0.55 -0.4
720,029 - AZOBR_RS29410 0.70 +1.1
720,029 - AZOBR_RS29410 0.70 -0.1
720,128 - AZOBR_RS29410 0.79 -0.6
720,430 + -0.1
720,431 - -0.9
720,431 - -0.8
720,588 + AZOBR_RS29415 0.24 +0.4
720,588 + AZOBR_RS29415 0.24 +0.0
721,341 - AZOBR_RS29420 0.24 +0.2
721,457 + AZOBR_RS29420 0.36 +0.8
721,457 + AZOBR_RS29420 0.36 -0.5
721,458 - AZOBR_RS29420 0.36 -0.4
721,458 - AZOBR_RS29420 0.36 +0.3
721,458 - AZOBR_RS29420 0.36 +0.3
721,458 - AZOBR_RS29420 0.36 -1.6
721,472 + AZOBR_RS29420 0.38 -0.7
721,473 - AZOBR_RS29420 0.38 -0.4
721,473 - AZOBR_RS29420 0.38 -0.7
721,473 - AZOBR_RS29420 0.38 +0.9
721,622 + AZOBR_RS29420 0.54 +0.0
721,622 + AZOBR_RS29420 0.54 -0.3
721,622 + AZOBR_RS29420 0.54 +4.1
721,622 + AZOBR_RS29420 0.54 -0.1
721,622 + AZOBR_RS29420 0.54 -0.3
721,623 - AZOBR_RS29420 0.54 -0.6
721,623 - AZOBR_RS29420 0.54 -1.1
721,623 - AZOBR_RS29420 0.54 +0.2
721,623 - AZOBR_RS29420 0.54 -0.8
721,623 - AZOBR_RS29420 0.54 -2.0
721,623 - AZOBR_RS29420 0.54 +1.1
721,623 - AZOBR_RS29420 0.54 +1.9
721,647 - AZOBR_RS29420 0.57 +0.9
721,647 - AZOBR_RS29420 0.57 +0.1
721,649 + AZOBR_RS29420 0.57 -0.6
721,650 - AZOBR_RS29420 0.57 -2.3

Or see this region's nucleotide sequence