Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28170 and AZOBR_RS28175 are separated by 126 nucleotides AZOBR_RS28175 and AZOBR_RS28180 are separated by 26 nucleotides AZOBR_RS28180 and AZOBR_RS28185 are separated by 28 nucleotides
AZOBR_RS28170: AZOBR_RS28170 - TetR family transcriptional regulator, at 490,780 to 491,376
_RS28170
AZOBR_RS28175: AZOBR_RS28175 - short-chain dehydrogenase, at 491,503 to 492,258
_RS28175
AZOBR_RS28180: AZOBR_RS28180 - acetyl-CoA acetyltransferase, at 492,285 to 493,478
_RS28180
AZOBR_RS28185: AZOBR_RS28185 - MFS transporter, at 493,507 to 494,793
_RS28185
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 491.512 kb on - strand at 491.966 kb on - strand, within AZOBR_RS28175 at 491.966 kb on - strand, within AZOBR_RS28175 at 492.273 kb on + strand at 492.274 kb on - strand at 492.663 kb on + strand, within AZOBR_RS28180 at 492.750 kb on + strand, within AZOBR_RS28180 at 492.750 kb on + strand, within AZOBR_RS28180 at 492.832 kb on - strand, within AZOBR_RS28180 at 492.832 kb on - strand, within AZOBR_RS28180 at 494.410 kb on + strand, within AZOBR_RS28185 at 494.411 kb on - strand, within AZOBR_RS28185 at 494.437 kb on + strand at 494.441 kb on - strand, within AZOBR_RS28185
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 491,512 - +1.7 491,966 - AZOBR_RS28175 0.61 -3.1 491,966 - AZOBR_RS28175 0.61 -0.3 492,273 + +0.4 492,274 - -1.9 492,663 + AZOBR_RS28180 0.32 -1.3 492,750 + AZOBR_RS28180 0.39 -1.0 492,750 + AZOBR_RS28180 0.39 -0.9 492,832 - AZOBR_RS28180 0.46 -0.7 492,832 - AZOBR_RS28180 0.46 +1.1 494,410 + AZOBR_RS28185 0.70 -0.0 494,411 - AZOBR_RS28185 0.70 -0.3 494,437 + +2.7 494,441 - AZOBR_RS28185 0.73 -0.6
Or see this region's nucleotide sequence