Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23220 and AZOBR_RS23225 are separated by 131 nucleotides AZOBR_RS23225 and AZOBR_RS23230 are separated by 254 nucleotides
AZOBR_RS23220: AZOBR_RS23220 - beta-aspartyl peptidase, at 221,364 to 223,352
_RS23220
AZOBR_RS23225: AZOBR_RS23225 - hypothetical protein, at 223,484 to 223,723
_RS23225
AZOBR_RS23230: AZOBR_RS23230 - hypothetical protein, at 223,978 to 225,396
_RS23230
Position (kb) 223
224 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 222.496 kb on + strand, within AZOBR_RS23220 at 222.496 kb on + strand, within AZOBR_RS23220 at 222.496 kb on + strand, within AZOBR_RS23220 at 222.844 kb on + strand, within AZOBR_RS23220 at 222.892 kb on + strand, within AZOBR_RS23220 at 222.919 kb on + strand, within AZOBR_RS23220 at 222.920 kb on - strand, within AZOBR_RS23220 at 222.920 kb on - strand, within AZOBR_RS23220 at 223.103 kb on - strand, within AZOBR_RS23220 at 223.103 kb on - strand, within AZOBR_RS23220 at 223.207 kb on + strand at 223.207 kb on + strand at 223.545 kb on + strand, within AZOBR_RS23225 at 223.546 kb on - strand, within AZOBR_RS23225 at 223.707 kb on + strand at 223.707 kb on + strand at 223.708 kb on - strand at 223.805 kb on - strand at 223.805 kb on - strand at 223.951 kb on + strand at 223.951 kb on + strand at 223.951 kb on + strand at 224.053 kb on + strand at 224.053 kb on + strand at 224.128 kb on + strand, within AZOBR_RS23230 at 224.518 kb on + strand, within AZOBR_RS23230 at 224.518 kb on + strand, within AZOBR_RS23230 at 224.519 kb on - strand, within AZOBR_RS23230 at 224.519 kb on - strand, within AZOBR_RS23230 at 224.519 kb on - strand, within AZOBR_RS23230 at 224.551 kb on + strand, within AZOBR_RS23230 at 224.551 kb on + strand, within AZOBR_RS23230 at 224.552 kb on - strand, within AZOBR_RS23230 at 224.552 kb on - strand, within AZOBR_RS23230 at 224.552 kb on - strand, within AZOBR_RS23230 at 224.713 kb on + strand, within AZOBR_RS23230 at 224.713 kb on + strand, within AZOBR_RS23230 at 224.713 kb on + strand, within AZOBR_RS23230 at 224.713 kb on + strand, within AZOBR_RS23230 at 224.713 kb on + strand, within AZOBR_RS23230 at 224.713 kb on + strand, within AZOBR_RS23230 at 224.713 kb on + strand, within AZOBR_RS23230 at 224.714 kb on - strand, within AZOBR_RS23230 at 224.714 kb on - strand, within AZOBR_RS23230 at 224.714 kb on - strand, within AZOBR_RS23230 at 224.714 kb on - strand, within AZOBR_RS23230 at 224.714 kb on - strand, within AZOBR_RS23230 at 224.716 kb on + strand, within AZOBR_RS23230 at 224.717 kb on - strand, within AZOBR_RS23230 at 224.717 kb on - strand, within AZOBR_RS23230
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 222,496 + AZOBR_RS23220 0.57 +1.0 222,496 + AZOBR_RS23220 0.57 +0.3 222,496 + AZOBR_RS23220 0.57 -0.3 222,844 + AZOBR_RS23220 0.74 -1.5 222,892 + AZOBR_RS23220 0.77 -1.0 222,919 + AZOBR_RS23220 0.78 -0.4 222,920 - AZOBR_RS23220 0.78 -0.5 222,920 - AZOBR_RS23220 0.78 +1.4 223,103 - AZOBR_RS23220 0.87 -0.4 223,103 - AZOBR_RS23220 0.87 +2.6 223,207 + -0.4 223,207 + +0.4 223,545 + AZOBR_RS23225 0.25 -0.3 223,546 - AZOBR_RS23225 0.26 -1.2 223,707 + -0.2 223,707 + +1.0 223,708 - -0.8 223,805 - +1.0 223,805 - +2.6 223,951 + +0.2 223,951 + +3.1 223,951 + +0.1 224,053 + -0.2 224,053 + -1.5 224,128 + AZOBR_RS23230 0.11 +0.2 224,518 + AZOBR_RS23230 0.38 -0.1 224,518 + AZOBR_RS23230 0.38 +0.6 224,519 - AZOBR_RS23230 0.38 +0.4 224,519 - AZOBR_RS23230 0.38 -0.4 224,519 - AZOBR_RS23230 0.38 +1.6 224,551 + AZOBR_RS23230 0.40 +1.0 224,551 + AZOBR_RS23230 0.40 +0.1 224,552 - AZOBR_RS23230 0.40 +0.3 224,552 - AZOBR_RS23230 0.40 -0.6 224,552 - AZOBR_RS23230 0.40 +0.6 224,713 + AZOBR_RS23230 0.52 +0.5 224,713 + AZOBR_RS23230 0.52 +1.0 224,713 + AZOBR_RS23230 0.52 -0.4 224,713 + AZOBR_RS23230 0.52 -1.3 224,713 + AZOBR_RS23230 0.52 -0.8 224,713 + AZOBR_RS23230 0.52 -1.4 224,713 + AZOBR_RS23230 0.52 +1.4 224,714 - AZOBR_RS23230 0.52 -1.1 224,714 - AZOBR_RS23230 0.52 -0.5 224,714 - AZOBR_RS23230 0.52 -2.4 224,714 - AZOBR_RS23230 0.52 -1.4 224,714 - AZOBR_RS23230 0.52 -1.4 224,716 + AZOBR_RS23230 0.52 -0.0 224,717 - AZOBR_RS23230 0.52 +1.4 224,717 - AZOBR_RS23230 0.52 +0.4
Or see this region's nucleotide sequence