Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16965 and AZOBR_RS16970 are separated by 22 nucleotides AZOBR_RS16970 and AZOBR_RS16975 are separated by 26 nucleotides AZOBR_RS16975 and AZOBR_RS16980 are separated by 133 nucleotides
AZOBR_RS16965: AZOBR_RS16965 - cell wall shape-determining protein, at 561,360 to 562,532
_RS16965
AZOBR_RS16970: AZOBR_RS16970 - hypothetical protein, at 562,555 to 563,859
_RS16970
AZOBR_RS16975: AZOBR_RS16975 - exopolysaccharide biosynthesis protein, at 563,886 to 564,578
_RS16975
AZOBR_RS16980: AZOBR_RS16980 - hypothetical protein, at 564,712 to 565,470
_RS16980
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2 at 562.081 kb on - strand, within AZOBR_RS16965 at 562.255 kb on - strand at 562.273 kb on - strand, within AZOBR_RS16965 at 562.425 kb on + strand at 562.426 kb on - strand at 562.716 kb on - strand, within AZOBR_RS16970 at 562.910 kb on + strand, within AZOBR_RS16970 at 563.519 kb on + strand, within AZOBR_RS16970 at 563.520 kb on - strand, within AZOBR_RS16970 at 563.520 kb on - strand, within AZOBR_RS16970 at 563.520 kb on - strand, within AZOBR_RS16970 at 563.634 kb on - strand, within AZOBR_RS16970 at 563.845 kb on + strand at 564.825 kb on - strand, within AZOBR_RS16980 at 564.825 kb on - strand, within AZOBR_RS16980
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 562,081 - AZOBR_RS16965 0.61 +1.8 562,255 - +2.6 562,273 - AZOBR_RS16965 0.78 +1.6 562,425 + +1.6 562,426 - +1.6 562,716 - AZOBR_RS16970 0.12 -0.4 562,910 + AZOBR_RS16970 0.27 -1.1 563,519 + AZOBR_RS16970 0.74 -1.1 563,520 - AZOBR_RS16970 0.74 +0.4 563,520 - AZOBR_RS16970 0.74 -2.1 563,520 - AZOBR_RS16970 0.74 +0.2 563,634 - AZOBR_RS16970 0.83 +0.4 563,845 + +1.7 564,825 - AZOBR_RS16980 0.15 -0.0 564,825 - AZOBR_RS16980 0.15 +0.2
Or see this region's nucleotide sequence