Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05530 and PGA1_c05540 are separated by 25 nucleotides PGA1_c05540 and PGA1_c05550 are separated by 342 nucleotides
PGA1_c05530: PGA1_c05530 - putative allantoin catabolism protein, at 564,946 to 565,938
_c05530
PGA1_c05540: PGA1_c05540 - transcriptional regulator, IclR family, at 565,964 to 566,782
_c05540
PGA1_c05550: PGA1_c05550 - glutamine synthase-like protein, at 567,125 to 568,576
_c05550
Position (kb) 565
566
567 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 564.974 kb on - strand at 565.007 kb on + strand at 565.153 kb on - strand, within PGA1_c05530 at 565.180 kb on - strand, within PGA1_c05530 at 565.186 kb on + strand, within PGA1_c05530 at 565.396 kb on + strand, within PGA1_c05530 at 565.437 kb on + strand, within PGA1_c05530 at 565.442 kb on + strand, within PGA1_c05530 at 565.449 kb on + strand, within PGA1_c05530 at 565.754 kb on - strand, within PGA1_c05530 at 565.762 kb on - strand, within PGA1_c05530 at 565.821 kb on - strand, within PGA1_c05530 at 565.828 kb on + strand, within PGA1_c05530 at 565.880 kb on + strand at 565.957 kb on + strand at 565.962 kb on + strand at 565.962 kb on + strand at 565.962 kb on + strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.970 kb on - strand at 565.981 kb on - strand at 566.022 kb on + strand at 566.040 kb on - strand at 566.042 kb on - strand at 566.050 kb on + strand, within PGA1_c05540 at 566.075 kb on + strand, within PGA1_c05540 at 566.126 kb on + strand, within PGA1_c05540 at 566.146 kb on + strand, within PGA1_c05540 at 566.156 kb on - strand, within PGA1_c05540 at 566.158 kb on + strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.166 kb on - strand, within PGA1_c05540 at 566.173 kb on - strand, within PGA1_c05540 at 566.181 kb on + strand, within PGA1_c05540 at 566.238 kb on + strand, within PGA1_c05540 at 566.296 kb on + strand, within PGA1_c05540 at 566.312 kb on + strand, within PGA1_c05540 at 566.312 kb on + strand, within PGA1_c05540 at 566.313 kb on + strand, within PGA1_c05540 at 566.400 kb on - strand, within PGA1_c05540 at 566.410 kb on - strand, within PGA1_c05540 at 566.434 kb on + strand, within PGA1_c05540 at 566.444 kb on - strand, within PGA1_c05540 at 566.456 kb on + strand, within PGA1_c05540 at 566.473 kb on - strand, within PGA1_c05540 at 566.513 kb on - strand, within PGA1_c05540 at 566.515 kb on + strand, within PGA1_c05540 at 566.532 kb on - strand, within PGA1_c05540 at 566.550 kb on - strand, within PGA1_c05540 at 566.606 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.612 kb on + strand, within PGA1_c05540 at 566.615 kb on - strand, within PGA1_c05540 at 566.615 kb on - strand, within PGA1_c05540 at 566.620 kb on - strand, within PGA1_c05540 at 566.644 kb on + strand, within PGA1_c05540 at 566.650 kb on + strand, within PGA1_c05540 at 566.675 kb on + strand, within PGA1_c05540 at 566.770 kb on - strand at 566.799 kb on + strand at 566.800 kb on + strand at 566.800 kb on + strand at 566.808 kb on - strand at 566.830 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.831 kb on + strand at 566.882 kb on + strand at 566.882 kb on + strand at 566.890 kb on - strand at 566.895 kb on - strand at 567.052 kb on - strand at 567.057 kb on - strand at 567.059 kb on - strand at 567.063 kb on + strand at 567.065 kb on + strand at 567.142 kb on - strand at 567.176 kb on + strand at 567.189 kb on - strand at 567.192 kb on + strand at 567.214 kb on + strand at 567.214 kb on + strand at 567.222 kb on - strand at 567.229 kb on + strand at 567.237 kb on + strand at 567.237 kb on - strand at 567.285 kb on - strand, within PGA1_c05550 at 567.299 kb on + strand, within PGA1_c05550 at 567.302 kb on - strand, within PGA1_c05550 at 567.354 kb on - strand, within PGA1_c05550 at 567.414 kb on + strand, within PGA1_c05550 at 567.475 kb on + strand, within PGA1_c05550 at 567.475 kb on + strand, within PGA1_c05550 at 567.475 kb on + strand, within PGA1_c05550 at 567.488 kb on + strand, within PGA1_c05550 at 567.536 kb on - strand, within PGA1_c05550 at 567.565 kb on - strand, within PGA1_c05550 at 567.653 kb on + strand, within PGA1_c05550 at 567.653 kb on + strand, within PGA1_c05550 at 567.656 kb on - strand, within PGA1_c05550 at 567.699 kb on + strand, within PGA1_c05550 at 567.710 kb on + strand, within PGA1_c05550 at 567.739 kb on + strand, within PGA1_c05550 at 567.751 kb on + strand, within PGA1_c05550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 564,974 - +1.1 565,007 + +1.1 565,153 - PGA1_c05530 0.21 +1.1 565,180 - PGA1_c05530 0.24 -1.5 565,186 + PGA1_c05530 0.24 +0.7 565,396 + PGA1_c05530 0.45 -2.4 565,437 + PGA1_c05530 0.49 +0.1 565,442 + PGA1_c05530 0.50 +1.3 565,449 + PGA1_c05530 0.51 +0.5 565,754 - PGA1_c05530 0.81 -0.9 565,762 - PGA1_c05530 0.82 -1.5 565,821 - PGA1_c05530 0.88 -1.9 565,828 + PGA1_c05530 0.89 +0.7 565,880 + -0.5 565,957 + -0.2 565,962 + +2.3 565,962 + +0.1 565,962 + +2.1 565,970 - +1.5 565,970 - +0.3 565,970 - +2.8 565,981 - +1.2 566,022 + -0.9 566,040 - +1.1 566,042 - -1.8 566,050 + PGA1_c05540 0.11 -0.9 566,075 + PGA1_c05540 0.14 +1.3 566,126 + PGA1_c05540 0.20 +1.0 566,146 + PGA1_c05540 0.22 +2.2 566,156 - PGA1_c05540 0.23 -0.5 566,158 + PGA1_c05540 0.24 -0.5 566,166 - PGA1_c05540 0.25 -2.1 566,166 - PGA1_c05540 0.25 +1.1 566,166 - PGA1_c05540 0.25 -0.5 566,166 - PGA1_c05540 0.25 +2.5 566,166 - PGA1_c05540 0.25 +1.6 566,166 - PGA1_c05540 0.25 +0.7 566,173 - PGA1_c05540 0.26 +1.1 566,181 + PGA1_c05540 0.26 +1.5 566,238 + PGA1_c05540 0.33 -0.5 566,296 + PGA1_c05540 0.41 +1.7 566,312 + PGA1_c05540 0.42 +0.5 566,312 + PGA1_c05540 0.42 +1.3 566,313 + PGA1_c05540 0.43 -1.5 566,400 - PGA1_c05540 0.53 +1.8 566,410 - PGA1_c05540 0.54 +1.1 566,434 + PGA1_c05540 0.57 -0.1 566,444 - PGA1_c05540 0.59 +2.4 566,456 + PGA1_c05540 0.60 +0.1 566,473 - PGA1_c05540 0.62 -0.1 566,513 - PGA1_c05540 0.67 +2.1 566,515 + PGA1_c05540 0.67 -0.1 566,532 - PGA1_c05540 0.69 -0.8 566,550 - PGA1_c05540 0.72 +2.2 566,606 + PGA1_c05540 0.78 +0.4 566,612 + PGA1_c05540 0.79 -0.3 566,612 + PGA1_c05540 0.79 -1.5 566,612 + PGA1_c05540 0.79 -0.3 566,612 + PGA1_c05540 0.79 +0.8 566,612 + PGA1_c05540 0.79 +0.1 566,612 + PGA1_c05540 0.79 +0.6 566,612 + PGA1_c05540 0.79 -0.4 566,612 + PGA1_c05540 0.79 -1.3 566,615 - PGA1_c05540 0.79 +1.4 566,615 - PGA1_c05540 0.79 -0.1 566,620 - PGA1_c05540 0.80 +1.1 566,644 + PGA1_c05540 0.83 +0.3 566,650 + PGA1_c05540 0.84 +0.4 566,675 + PGA1_c05540 0.87 +2.2 566,770 - +0.7 566,799 + +0.6 566,800 + -0.5 566,800 + -1.4 566,808 - +0.7 566,830 + +2.1 566,831 + +0.8 566,831 + +3.4 566,831 + +1.3 566,831 + +0.8 566,882 + +0.5 566,882 + +0.5 566,890 - +1.6 566,895 - -0.9 567,052 - -0.7 567,057 - +0.2 567,059 - -0.8 567,063 + +0.3 567,065 + -1.1 567,142 - -0.4 567,176 + -1.3 567,189 - +0.6 567,192 + -0.9 567,214 + +1.1 567,214 + +0.3 567,222 - -0.9 567,229 + -1.5 567,237 + -1.4 567,237 - +1.0 567,285 - PGA1_c05550 0.11 +2.1 567,299 + PGA1_c05550 0.12 +1.8 567,302 - PGA1_c05550 0.12 +0.2 567,354 - PGA1_c05550 0.16 +0.5 567,414 + PGA1_c05550 0.20 -0.9 567,475 + PGA1_c05550 0.24 -0.2 567,475 + PGA1_c05550 0.24 +0.1 567,475 + PGA1_c05550 0.24 +0.1 567,488 + PGA1_c05550 0.25 +0.1 567,536 - PGA1_c05550 0.28 +0.9 567,565 - PGA1_c05550 0.30 +0.4 567,653 + PGA1_c05550 0.36 +0.4 567,653 + PGA1_c05550 0.36 -0.5 567,656 - PGA1_c05550 0.37 +0.3 567,699 + PGA1_c05550 0.40 -0.2 567,710 + PGA1_c05550 0.40 +1.1 567,739 + PGA1_c05550 0.42 +0.7 567,751 + PGA1_c05550 0.43 -1.4
Or see this region's nucleotide sequence