Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00580 and PGA1_262p00590 are separated by 34 nucleotides PGA1_262p00590 and PGA1_262p00600 overlap by 4 nucleotides PGA1_262p00600 and PGA1_262p00610 are separated by 127 nucleotides PGA1_262p00610 and PGA1_262p00620 are separated by 132 nucleotides
PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163
_262p00580
PGA1_262p00590: PGA1_262p00590 - Protein of unknown function (DUF2886)., at 68,198 to 68,857
_262p00590
PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983
_262p00600
PGA1_262p00610: PGA1_262p00610 - metallophosphoesterase, at 71,111 to 71,839
_262p00610
PGA1_262p00620: PGA1_262p00620 - hypothetical protein, at 71,972 to 72,625
_262p00620
Position (kb) 68
69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 67.875 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 67.875 kb on - strand, within PGA1_262p00580 at 68.008 kb on - strand, within PGA1_262p00580 at 68.008 kb on - strand, within PGA1_262p00580 at 68.101 kb on - strand at 68.197 kb on + strand at 68.208 kb on + strand at 68.322 kb on - strand, within PGA1_262p00590 at 68.423 kb on - strand, within PGA1_262p00590 at 68.643 kb on - strand, within PGA1_262p00590 at 68.709 kb on - strand, within PGA1_262p00590 at 68.742 kb on - strand, within PGA1_262p00590 at 68.771 kb on + strand, within PGA1_262p00590 at 68.798 kb on - strand at 68.850 kb on + strand at 68.892 kb on + strand at 68.956 kb on + strand at 68.982 kb on - strand at 69.035 kb on + strand at 69.043 kb on - strand at 69.189 kb on + strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.293 kb on - strand, within PGA1_262p00600 at 69.298 kb on - strand, within PGA1_262p00600 at 69.367 kb on + strand, within PGA1_262p00600 at 69.488 kb on + strand, within PGA1_262p00600 at 69.502 kb on - strand, within PGA1_262p00600 at 69.507 kb on - strand, within PGA1_262p00600 at 69.509 kb on + strand, within PGA1_262p00600 at 69.530 kb on + strand, within PGA1_262p00600 at 69.738 kb on - strand, within PGA1_262p00600 at 69.760 kb on - strand, within PGA1_262p00600 at 69.913 kb on + strand, within PGA1_262p00600 at 69.921 kb on - strand, within PGA1_262p00600 at 70.000 kb on + strand, within PGA1_262p00600 at 70.007 kb on + strand, within PGA1_262p00600 at 70.067 kb on + strand, within PGA1_262p00600 at 70.181 kb on + strand, within PGA1_262p00600 at 70.210 kb on + strand, within PGA1_262p00600 at 70.238 kb on - strand, within PGA1_262p00600 at 70.298 kb on + strand, within PGA1_262p00600 at 70.349 kb on - strand, within PGA1_262p00600 at 70.405 kb on - strand, within PGA1_262p00600 at 70.557 kb on + strand, within PGA1_262p00600 at 70.557 kb on + strand, within PGA1_262p00600 at 70.629 kb on + strand, within PGA1_262p00600 at 70.674 kb on - strand, within PGA1_262p00600 at 70.705 kb on + strand, within PGA1_262p00600 at 70.835 kb on - strand at 70.874 kb on + strand at 71.025 kb on + strand at 71.037 kb on + strand at 71.037 kb on + strand at 71.037 kb on + strand at 71.043 kb on - strand at 71.047 kb on + strand at 71.092 kb on - strand at 71.169 kb on + strand at 71.169 kb on + strand at 71.177 kb on - strand at 71.302 kb on - strand, within PGA1_262p00610 at 71.448 kb on + strand, within PGA1_262p00610 at 71.513 kb on - strand, within PGA1_262p00610 at 71.650 kb on + strand, within PGA1_262p00610
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 67,875 - PGA1_262p00580 0.79 +1.2 67,875 - PGA1_262p00580 0.79 -1.2 67,875 - PGA1_262p00580 0.79 +0.3 68,008 - PGA1_262p00580 0.89 -0.1 68,008 - PGA1_262p00580 0.89 -0.6 68,101 - +0.8 68,197 + +0.6 68,208 + +1.1 68,322 - PGA1_262p00590 0.19 +0.4 68,423 - PGA1_262p00590 0.34 +0.7 68,643 - PGA1_262p00590 0.67 +0.2 68,709 - PGA1_262p00590 0.77 +1.6 68,742 - PGA1_262p00590 0.82 -1.7 68,771 + PGA1_262p00590 0.87 +0.6 68,798 - -0.7 68,850 + -0.4 68,892 + +0.1 68,956 + +0.6 68,982 - +0.1 69,035 + -1.6 69,043 - +0.1 69,189 + PGA1_262p00600 0.16 -2.4 69,293 - PGA1_262p00600 0.21 +0.6 69,293 - PGA1_262p00600 0.21 -0.7 69,293 - PGA1_262p00600 0.21 +2.0 69,298 - PGA1_262p00600 0.21 -0.4 69,367 + PGA1_262p00600 0.24 +0.2 69,488 + PGA1_262p00600 0.30 +1.8 69,502 - PGA1_262p00600 0.30 -0.7 69,507 - PGA1_262p00600 0.31 +0.0 69,509 + PGA1_262p00600 0.31 -3.0 69,530 + PGA1_262p00600 0.32 +0.1 69,738 - PGA1_262p00600 0.42 +0.3 69,760 - PGA1_262p00600 0.43 -2.7 69,913 + PGA1_262p00600 0.50 +0.8 69,921 - PGA1_262p00600 0.50 -0.5 70,000 + PGA1_262p00600 0.54 -1.4 70,007 + PGA1_262p00600 0.54 -2.4 70,067 + PGA1_262p00600 0.57 -1.0 70,181 + PGA1_262p00600 0.62 +0.2 70,210 + PGA1_262p00600 0.64 -0.1 70,238 - PGA1_262p00600 0.65 -0.3 70,298 + PGA1_262p00600 0.68 -0.4 70,349 - PGA1_262p00600 0.70 -1.0 70,405 - PGA1_262p00600 0.73 +0.6 70,557 + PGA1_262p00600 0.80 +1.2 70,557 + PGA1_262p00600 0.80 +1.1 70,629 + PGA1_262p00600 0.83 -0.9 70,674 - PGA1_262p00600 0.85 -0.2 70,705 + PGA1_262p00600 0.87 -0.6 70,835 - -1.0 70,874 + +0.1 71,025 + +1.2 71,037 + -0.9 71,037 + -0.1 71,037 + -0.6 71,043 - -1.0 71,047 + -0.4 71,092 - +1.3 71,169 + +0.3 71,169 + +0.9 71,177 - -0.3 71,302 - PGA1_262p00610 0.26 -0.6 71,448 + PGA1_262p00610 0.46 -0.5 71,513 - PGA1_262p00610 0.55 +0.6 71,650 + PGA1_262p00610 0.74 +0.4
Or see this region's nucleotide sequence