Experiment: m.b. nitrate 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07180 and PGA1_c07190 are separated by 226 nucleotides PGA1_c07190 and PGA1_c07200 are separated by 57 nucleotides
PGA1_c07180: PGA1_c07180 - 2-hydroxy-3-oxopropionate reductase-like protein, at 738,083 to 739,048
_c07180
PGA1_c07190: PGA1_c07190 - transcriptional regulator, IclR family, at 739,275 to 740,348
_c07190
PGA1_c07200: PGA1_c07200 - phytanoyl-CoA dioxygenase-like protein, at 740,406 to 741,590
_c07200
Position (kb) 739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.334 kb on + strand, within PGA1_c07180 at 738.336 kb on + strand, within PGA1_c07180 at 738.355 kb on + strand, within PGA1_c07180 at 738.363 kb on + strand, within PGA1_c07180 at 738.437 kb on + strand, within PGA1_c07180 at 738.466 kb on + strand, within PGA1_c07180 at 738.469 kb on - strand, within PGA1_c07180 at 738.491 kb on + strand, within PGA1_c07180 at 738.491 kb on + strand, within PGA1_c07180 at 738.509 kb on + strand, within PGA1_c07180 at 738.517 kb on - strand, within PGA1_c07180 at 738.517 kb on - strand, within PGA1_c07180 at 738.559 kb on + strand, within PGA1_c07180 at 738.567 kb on - strand, within PGA1_c07180 at 738.594 kb on - strand, within PGA1_c07180 at 738.632 kb on + strand, within PGA1_c07180 at 738.633 kb on - strand, within PGA1_c07180 at 738.633 kb on - strand, within PGA1_c07180 at 738.656 kb on + strand, within PGA1_c07180 at 738.690 kb on + strand, within PGA1_c07180 at 738.707 kb on + strand, within PGA1_c07180 at 738.715 kb on - strand, within PGA1_c07180 at 738.750 kb on + strand, within PGA1_c07180 at 738.766 kb on + strand, within PGA1_c07180 at 738.786 kb on + strand, within PGA1_c07180 at 738.794 kb on - strand, within PGA1_c07180 at 738.856 kb on + strand, within PGA1_c07180 at 738.861 kb on + strand, within PGA1_c07180 at 738.861 kb on + strand, within PGA1_c07180 at 738.863 kb on + strand, within PGA1_c07180 at 738.928 kb on + strand, within PGA1_c07180 at 738.976 kb on - strand at 738.981 kb on - strand at 738.994 kb on + strand at 738.994 kb on + strand at 739.002 kb on - strand at 739.025 kb on - strand at 739.151 kb on + strand at 739.156 kb on + strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.161 kb on + strand at 739.161 kb on + strand at 739.188 kb on + strand at 739.199 kb on + strand at 739.209 kb on + strand at 739.248 kb on + strand at 739.261 kb on - strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.296 kb on + strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.304 kb on - strand at 739.339 kb on + strand at 739.357 kb on + strand at 739.365 kb on - strand at 739.365 kb on - strand at 739.376 kb on + strand at 739.378 kb on + strand at 739.389 kb on + strand, within PGA1_c07190 at 739.444 kb on + strand, within PGA1_c07190 at 739.452 kb on - strand, within PGA1_c07190 at 739.466 kb on - strand, within PGA1_c07190 at 739.487 kb on - strand, within PGA1_c07190 at 739.493 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.511 kb on - strand, within PGA1_c07190 at 739.526 kb on + strand, within PGA1_c07190 at 739.569 kb on + strand, within PGA1_c07190 at 739.577 kb on - strand, within PGA1_c07190 at 739.590 kb on - strand, within PGA1_c07190 at 739.605 kb on + strand, within PGA1_c07190 at 739.613 kb on - strand, within PGA1_c07190 at 739.613 kb on - strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.703 kb on - strand, within PGA1_c07190 at 739.752 kb on + strand, within PGA1_c07190 at 739.912 kb on + strand, within PGA1_c07190 at 739.941 kb on + strand, within PGA1_c07190 at 739.943 kb on + strand, within PGA1_c07190 at 739.945 kb on - strand, within PGA1_c07190 at 739.957 kb on - strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.993 kb on - strand, within PGA1_c07190 at 740.045 kb on - strand, within PGA1_c07190 at 740.048 kb on + strand, within PGA1_c07190 at 740.056 kb on - strand, within PGA1_c07190 at 740.056 kb on - strand, within PGA1_c07190 at 740.058 kb on + strand, within PGA1_c07190 at 740.066 kb on - strand, within PGA1_c07190 at 740.216 kb on + strand, within PGA1_c07190 at 740.247 kb on + strand at 740.247 kb on + strand at 740.341 kb on + strand at 740.341 kb on + strand at 740.349 kb on + strand at 740.349 kb on - strand at 740.349 kb on - strand at 740.389 kb on + strand at 740.389 kb on + strand at 740.389 kb on + strand at 740.389 kb on + strand at 740.389 kb on + strand at 740.397 kb on - strand at 740.402 kb on - strand at 740.435 kb on + strand at 740.443 kb on - strand at 740.443 kb on - strand at 740.506 kb on + strand at 740.514 kb on + strand at 740.567 kb on + strand, within PGA1_c07200 at 740.638 kb on + strand, within PGA1_c07200 at 740.724 kb on + strand, within PGA1_c07200 at 740.726 kb on + strand, within PGA1_c07200 at 740.732 kb on - strand, within PGA1_c07200 at 740.739 kb on + strand, within PGA1_c07200 at 740.773 kb on + strand, within PGA1_c07200 at 740.810 kb on + strand, within PGA1_c07200 at 740.810 kb on + strand, within PGA1_c07200 at 740.818 kb on - strand, within PGA1_c07200 at 740.829 kb on - strand, within PGA1_c07200 at 740.894 kb on - strand, within PGA1_c07200 at 740.912 kb on + strand, within PGA1_c07200 at 741.030 kb on + strand, within PGA1_c07200 at 741.038 kb on - strand, within PGA1_c07200 at 741.089 kb on - strand, within PGA1_c07200 at 741.089 kb on - strand, within PGA1_c07200 at 741.118 kb on - strand, within PGA1_c07200 at 741.124 kb on + strand, within PGA1_c07200 at 741.132 kb on + strand, within PGA1_c07200 at 741.132 kb on + strand, within PGA1_c07200 at 741.132 kb on + strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.140 kb on - strand, within PGA1_c07200 at 741.149 kb on + strand, within PGA1_c07200 at 741.180 kb on + strand, within PGA1_c07200 at 741.180 kb on + strand, within PGA1_c07200 at 741.180 kb on + strand, within PGA1_c07200 at 741.258 kb on - strand, within PGA1_c07200 at 741.269 kb on - strand, within PGA1_c07200 at 741.297 kb on + strand, within PGA1_c07200 at 741.297 kb on + strand, within PGA1_c07200 at 741.305 kb on - strand, within PGA1_c07200 at 741.315 kb on - strand, within PGA1_c07200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 100 mM remove 738,324 + PGA1_c07180 0.25 -0.6 738,324 + PGA1_c07180 0.25 -1.0 738,324 + PGA1_c07180 0.25 +0.1 738,324 + PGA1_c07180 0.25 -1.9 738,332 - PGA1_c07180 0.26 -1.4 738,332 - PGA1_c07180 0.26 -0.4 738,332 - PGA1_c07180 0.26 -1.3 738,332 - PGA1_c07180 0.26 -0.5 738,332 - PGA1_c07180 0.26 -0.8 738,332 - PGA1_c07180 0.26 +0.2 738,332 - PGA1_c07180 0.26 +0.2 738,332 - PGA1_c07180 0.26 -0.2 738,334 + PGA1_c07180 0.26 +0.6 738,336 + PGA1_c07180 0.26 -1.0 738,355 + PGA1_c07180 0.28 +1.1 738,363 + PGA1_c07180 0.29 -0.6 738,437 + PGA1_c07180 0.37 -0.1 738,466 + PGA1_c07180 0.40 -0.1 738,469 - PGA1_c07180 0.40 +0.7 738,491 + PGA1_c07180 0.42 +1.3 738,491 + PGA1_c07180 0.42 +0.5 738,509 + PGA1_c07180 0.44 -0.3 738,517 - PGA1_c07180 0.45 -0.2 738,517 - PGA1_c07180 0.45 +0.2 738,559 + PGA1_c07180 0.49 -1.2 738,567 - PGA1_c07180 0.50 +1.1 738,594 - PGA1_c07180 0.53 -0.3 738,632 + PGA1_c07180 0.57 -0.4 738,633 - PGA1_c07180 0.57 -0.0 738,633 - PGA1_c07180 0.57 +0.1 738,656 + PGA1_c07180 0.59 +0.2 738,690 + PGA1_c07180 0.63 -2.9 738,707 + PGA1_c07180 0.65 -0.4 738,715 - PGA1_c07180 0.65 +0.3 738,750 + PGA1_c07180 0.69 -0.4 738,766 + PGA1_c07180 0.71 +0.5 738,786 + PGA1_c07180 0.73 -3.0 738,794 - PGA1_c07180 0.74 +0.2 738,856 + PGA1_c07180 0.80 -0.9 738,861 + PGA1_c07180 0.81 +0.2 738,861 + PGA1_c07180 0.81 +0.4 738,863 + PGA1_c07180 0.81 -0.0 738,928 + PGA1_c07180 0.87 +0.3 738,976 - -0.2 738,981 - -1.1 738,994 + -3.2 738,994 + -0.3 739,002 - -1.4 739,025 - -0.2 739,151 + -1.0 739,156 + +0.2 739,159 - -2.9 739,159 - +0.9 739,159 - -1.9 739,159 - +0.4 739,159 - -1.8 739,161 + +0.9 739,161 + +0.7 739,188 + -1.5 739,199 + -0.2 739,209 + +0.4 739,248 + +0.3 739,261 - -0.0 739,290 + -0.7 739,290 + -2.0 739,290 + -0.0 739,290 + -1.9 739,290 + -0.8 739,296 + -0.6 739,298 - +1.8 739,298 - -0.7 739,298 - +2.0 739,298 - -1.3 739,304 - +1.0 739,339 + +0.1 739,357 + +0.6 739,365 - -0.0 739,365 - -1.4 739,376 + +1.5 739,378 + -0.5 739,389 + PGA1_c07190 0.11 -3.3 739,444 + PGA1_c07190 0.16 +0.1 739,452 - PGA1_c07190 0.16 +0.3 739,466 - PGA1_c07190 0.18 -1.2 739,487 - PGA1_c07190 0.20 -2.2 739,493 + PGA1_c07190 0.20 -0.7 739,501 + PGA1_c07190 0.21 -0.4 739,501 + PGA1_c07190 0.21 -0.4 739,501 + PGA1_c07190 0.21 +0.8 739,501 + PGA1_c07190 0.21 -0.1 739,501 - PGA1_c07190 0.21 +0.8 739,509 - PGA1_c07190 0.22 +0.3 739,509 - PGA1_c07190 0.22 +0.7 739,509 - PGA1_c07190 0.22 -0.7 739,509 - PGA1_c07190 0.22 +1.2 739,511 - PGA1_c07190 0.22 +0.9 739,526 + PGA1_c07190 0.23 +0.3 739,569 + PGA1_c07190 0.27 -0.7 739,577 - PGA1_c07190 0.28 -0.0 739,590 - PGA1_c07190 0.29 +2.0 739,605 + PGA1_c07190 0.31 -0.8 739,613 - PGA1_c07190 0.31 -0.3 739,613 - PGA1_c07190 0.31 -1.2 739,695 + PGA1_c07190 0.39 -1.2 739,695 + PGA1_c07190 0.39 -0.8 739,695 + PGA1_c07190 0.39 -0.6 739,695 + PGA1_c07190 0.39 -0.6 739,695 + PGA1_c07190 0.39 -0.9 739,695 + PGA1_c07190 0.39 +0.6 739,695 + PGA1_c07190 0.39 +0.6 739,703 - PGA1_c07190 0.40 -2.6 739,752 + PGA1_c07190 0.44 -0.5 739,912 + PGA1_c07190 0.59 -1.3 739,941 + PGA1_c07190 0.62 +0.8 739,943 + PGA1_c07190 0.62 +0.1 739,945 - PGA1_c07190 0.62 -0.9 739,957 - PGA1_c07190 0.64 -1.0 739,985 + PGA1_c07190 0.66 -0.1 739,985 + PGA1_c07190 0.66 +0.7 739,985 + PGA1_c07190 0.66 +0.1 739,993 - PGA1_c07190 0.67 +1.3 740,045 - PGA1_c07190 0.72 -0.8 740,048 + PGA1_c07190 0.72 -1.7 740,056 - PGA1_c07190 0.73 -0.3 740,056 - PGA1_c07190 0.73 +0.2 740,058 + PGA1_c07190 0.73 +0.1 740,066 - PGA1_c07190 0.74 -0.9 740,216 + PGA1_c07190 0.88 +0.2 740,247 + -0.1 740,247 + -1.1 740,341 + -1.0 740,341 + -0.2 740,349 + -0.0 740,349 - -0.7 740,349 - +0.4 740,389 + +0.2 740,389 + +0.5 740,389 + -1.4 740,389 + +0.2 740,389 + +0.1 740,397 - -1.4 740,402 - +1.4 740,435 + -1.2 740,443 - -0.6 740,443 - -0.3 740,506 + -0.2 740,514 + -0.0 740,567 + PGA1_c07200 0.14 -2.8 740,638 + PGA1_c07200 0.20 -0.4 740,724 + PGA1_c07200 0.27 -3.3 740,726 + PGA1_c07200 0.27 +0.6 740,732 - PGA1_c07200 0.28 +0.6 740,739 + PGA1_c07200 0.28 -0.3 740,773 + PGA1_c07200 0.31 +1.0 740,810 + PGA1_c07200 0.34 -0.6 740,810 + PGA1_c07200 0.34 +1.4 740,818 - PGA1_c07200 0.35 -2.2 740,829 - PGA1_c07200 0.36 -1.0 740,894 - PGA1_c07200 0.41 -0.5 740,912 + PGA1_c07200 0.43 +0.8 741,030 + PGA1_c07200 0.53 -0.2 741,038 - PGA1_c07200 0.53 -0.8 741,089 - PGA1_c07200 0.58 +0.3 741,089 - PGA1_c07200 0.58 +0.4 741,118 - PGA1_c07200 0.60 +0.3 741,124 + PGA1_c07200 0.61 +0.1 741,132 + PGA1_c07200 0.61 +0.1 741,132 + PGA1_c07200 0.61 +0.4 741,132 + PGA1_c07200 0.61 -1.0 741,140 - PGA1_c07200 0.62 -0.8 741,140 - PGA1_c07200 0.62 +0.1 741,140 - PGA1_c07200 0.62 -0.6 741,140 - PGA1_c07200 0.62 -0.1 741,140 - PGA1_c07200 0.62 +0.0 741,140 - PGA1_c07200 0.62 +0.3 741,140 - PGA1_c07200 0.62 +1.3 741,140 - PGA1_c07200 0.62 -0.9 741,140 - PGA1_c07200 0.62 -0.4 741,140 - PGA1_c07200 0.62 -0.5 741,149 + PGA1_c07200 0.63 -1.8 741,180 + PGA1_c07200 0.65 -1.0 741,180 + PGA1_c07200 0.65 +1.6 741,180 + PGA1_c07200 0.65 +0.9 741,258 - PGA1_c07200 0.72 +0.2 741,269 - PGA1_c07200 0.73 -0.2 741,297 + PGA1_c07200 0.75 +0.4 741,297 + PGA1_c07200 0.75 -1.6 741,305 - PGA1_c07200 0.76 -0.3 741,315 - PGA1_c07200 0.77 +0.5
Or see this region's nucleotide sequence