Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_87 and HP15_88 overlap by 4 nucleotides HP15_88 and HP15_89 are separated by 63 nucleotides HP15_89 and HP15_90 are separated by 61 nucleotides HP15_90 and HP15_91 overlap by 4 nucleotides
HP15_87: HP15_87 - disulfide oxidoreductase C BdbC, at 93,494 to 93,928
_87
HP15_88: HP15_88 - cation efflux protein, at 93,925 to 94,650
_88
HP15_89: HP15_89 - transcriptional regulator, MerR family protein, at 94,714 to 95,127
_89
HP15_90: HP15_90 - electron transport protein SCO1/SenC, at 95,189 to 95,812
_90
HP15_91: HP15_91 - conserved hypothetical protein, membrane, at 95,809 to 96,651
_91
Position (kb)
94
95
96 Strain fitness (log2 ratio)
-1
0
1
2 at 93.720 kb on - strand, within HP15_87 at 93.798 kb on + strand, within HP15_87 at 93.811 kb on - strand, within HP15_87 at 93.813 kb on + strand, within HP15_87 at 93.995 kb on - strand at 94.000 kb on + strand, within HP15_88 at 94.002 kb on + strand, within HP15_88 at 94.127 kb on - strand, within HP15_88 at 94.137 kb on + strand, within HP15_88 at 94.139 kb on + strand, within HP15_88 at 94.145 kb on - strand, within HP15_88 at 94.147 kb on - strand, within HP15_88 at 94.147 kb on - strand, within HP15_88 at 94.153 kb on + strand, within HP15_88 at 94.161 kb on - strand, within HP15_88 at 94.210 kb on + strand, within HP15_88 at 94.235 kb on - strand, within HP15_88 at 94.260 kb on + strand, within HP15_88 at 94.315 kb on - strand, within HP15_88 at 94.410 kb on - strand, within HP15_88 at 94.506 kb on + strand, within HP15_88 at 94.519 kb on - strand, within HP15_88 at 94.577 kb on + strand, within HP15_88 at 94.599 kb on - strand at 94.667 kb on - strand at 94.667 kb on - strand at 94.699 kb on - strand at 94.702 kb on + strand at 94.709 kb on + strand at 94.709 kb on + strand at 94.900 kb on - strand, within HP15_89 at 94.912 kb on - strand, within HP15_89 at 95.052 kb on - strand, within HP15_89 at 95.062 kb on - strand, within HP15_89 at 95.110 kb on + strand at 95.120 kb on - strand at 95.120 kb on - strand at 95.147 kb on - strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.148 kb on + strand at 95.158 kb on + strand at 95.166 kb on - strand at 95.169 kb on + strand at 95.366 kb on - strand, within HP15_90 at 95.384 kb on + strand, within HP15_90 at 95.392 kb on - strand, within HP15_90 at 95.624 kb on - strand, within HP15_90 at 95.640 kb on - strand, within HP15_90 at 95.758 kb on + strand at 95.758 kb on + strand at 95.889 kb on - strand at 95.918 kb on + strand, within HP15_91 at 95.919 kb on + strand, within HP15_91 at 95.921 kb on + strand, within HP15_91 at 95.921 kb on + strand, within HP15_91 at 95.929 kb on - strand, within HP15_91 at 95.929 kb on - strand, within HP15_91
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 93,720 - HP15_87 0.52 -0.4 93,798 + HP15_87 0.70 -0.2 93,811 - HP15_87 0.73 +0.7 93,813 + HP15_87 0.73 +0.5 93,995 - +0.5 94,000 + HP15_88 0.10 -0.2 94,002 + HP15_88 0.11 +0.1 94,127 - HP15_88 0.28 -1.0 94,137 + HP15_88 0.29 -0.6 94,139 + HP15_88 0.29 +0.0 94,145 - HP15_88 0.30 +2.2 94,147 - HP15_88 0.31 +2.3 94,147 - HP15_88 0.31 -0.4 94,153 + HP15_88 0.31 +0.7 94,161 - HP15_88 0.33 -0.2 94,210 + HP15_88 0.39 +0.7 94,235 - HP15_88 0.43 +0.1 94,260 + HP15_88 0.46 +0.6 94,315 - HP15_88 0.54 -0.3 94,410 - HP15_88 0.67 -0.9 94,506 + HP15_88 0.80 +2.0 94,519 - HP15_88 0.82 +0.1 94,577 + HP15_88 0.90 +0.5 94,599 - -0.5 94,667 - -0.3 94,667 - -0.1 94,699 - +0.6 94,702 + -1.2 94,709 + -1.0 94,709 + +1.7 94,900 - HP15_89 0.45 -0.5 94,912 - HP15_89 0.48 +0.8 95,052 - HP15_89 0.82 -0.2 95,062 - HP15_89 0.84 -1.1 95,110 + +0.0 95,120 - -0.6 95,120 - -0.9 95,147 - +2.1 95,148 + +2.2 95,148 + -0.6 95,148 + +2.1 95,148 + -0.5 95,148 + -0.2 95,148 + -0.2 95,158 + +1.7 95,166 - +1.9 95,169 + -0.1 95,366 - HP15_90 0.28 -0.7 95,384 + HP15_90 0.31 -1.4 95,392 - HP15_90 0.33 -0.3 95,624 - HP15_90 0.70 -0.2 95,640 - HP15_90 0.72 -0.2 95,758 + +1.8 95,758 + +2.1 95,889 - -0.3 95,918 + HP15_91 0.13 -0.3 95,919 + HP15_91 0.13 -0.5 95,921 + HP15_91 0.13 -0.5 95,921 + HP15_91 0.13 -1.7 95,929 - HP15_91 0.14 +0.1 95,929 - HP15_91 0.14 -0.5
Or see this region's nucleotide sequence