Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_850 and HP15_851 are separated by 24 nucleotides HP15_851 and HP15_852 are separated by 25 nucleotides HP15_852 and HP15_853 are separated by 18 nucleotides HP15_853 and HP15_854 are separated by 64 nucleotides HP15_854 and HP15_855 overlap by 1 nucleotides
HP15_850: HP15_850 - GGDEF domain protein, at 868,352 to 869,392
_850
HP15_851: HP15_851 - integral membrane protein-like protein, at 869,417 to 869,872
_851
HP15_852: HP15_852 - MaoC-like dehydratase, at 869,898 to 870,368
_852
HP15_853: HP15_853 - RIO1/ZK632.3/MJ0444 family protein, at 870,387 to 871,283
_853
HP15_854: HP15_854 - conserved hypothetical protein, secreted, at 871,348 to 872,208
_854
HP15_855: HP15_855 - M23 peptidase domain protein, at 872,208 to 873,176
_855
Position (kb) 870
871
872 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 869.454 kb on - strand at 869.586 kb on + strand, within HP15_851 at 869.786 kb on - strand, within HP15_851 at 869.837 kb on - strand at 869.867 kb on + strand at 869.875 kb on - strand at 869.875 kb on - strand at 869.875 kb on - strand at 869.984 kb on - strand, within HP15_852 at 870.048 kb on + strand, within HP15_852 at 870.055 kb on - strand, within HP15_852 at 870.100 kb on + strand, within HP15_852 at 870.195 kb on - strand, within HP15_852 at 870.233 kb on + strand, within HP15_852 at 870.377 kb on + strand at 870.403 kb on - strand at 870.538 kb on + strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.584 kb on + strand, within HP15_853 at 870.820 kb on - strand, within HP15_853 at 870.858 kb on - strand, within HP15_853 at 870.911 kb on - strand, within HP15_853 at 870.944 kb on + strand, within HP15_853 at 871.038 kb on + strand, within HP15_853 at 871.046 kb on - strand, within HP15_853 at 871.084 kb on - strand, within HP15_853 at 871.144 kb on + strand, within HP15_853 at 871.157 kb on + strand, within HP15_853 at 871.302 kb on + strand at 871.313 kb on + strand at 871.320 kb on - strand at 871.345 kb on - strand at 871.394 kb on + strand at 871.394 kb on + strand at 871.428 kb on - strand at 871.509 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.511 kb on - strand, within HP15_854 at 871.557 kb on - strand, within HP15_854 at 871.557 kb on - strand, within HP15_854 at 871.562 kb on - strand, within HP15_854 at 871.566 kb on + strand, within HP15_854 at 871.567 kb on - strand, within HP15_854 at 871.574 kb on - strand, within HP15_854 at 871.757 kb on - strand, within HP15_854 at 871.798 kb on + strand, within HP15_854 at 871.798 kb on + strand, within HP15_854 at 871.848 kb on - strand, within HP15_854 at 871.931 kb on + strand, within HP15_854 at 872.043 kb on + strand, within HP15_854 at 872.048 kb on + strand, within HP15_854 at 872.165 kb on + strand at 872.165 kb on + strand at 872.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 869,454 - +1.3 869,586 + HP15_851 0.37 -0.2 869,786 - HP15_851 0.81 +1.4 869,837 - +1.9 869,867 + +2.4 869,875 - +3.1 869,875 - -0.5 869,875 - -0.1 869,984 - HP15_852 0.18 +2.5 870,048 + HP15_852 0.32 -1.0 870,055 - HP15_852 0.33 -0.3 870,100 + HP15_852 0.43 -0.1 870,195 - HP15_852 0.63 -1.0 870,233 + HP15_852 0.71 +1.6 870,377 + +1.2 870,403 - +0.0 870,538 + HP15_853 0.17 +2.4 870,582 - HP15_853 0.22 +0.4 870,582 - HP15_853 0.22 -0.1 870,584 + HP15_853 0.22 -0.1 870,820 - HP15_853 0.48 -1.3 870,858 - HP15_853 0.53 +0.6 870,911 - HP15_853 0.58 -2.0 870,944 + HP15_853 0.62 -0.2 871,038 + HP15_853 0.73 -0.9 871,046 - HP15_853 0.73 -0.2 871,084 - HP15_853 0.78 -0.5 871,144 + HP15_853 0.84 -0.1 871,157 + HP15_853 0.86 -1.7 871,302 + -0.4 871,313 + +2.1 871,320 - +1.8 871,345 - +0.2 871,394 + -1.2 871,394 + -0.9 871,428 - +0.0 871,509 - HP15_854 0.19 +1.5 871,511 - HP15_854 0.19 -0.8 871,511 - HP15_854 0.19 +2.5 871,511 - HP15_854 0.19 +0.4 871,557 - HP15_854 0.24 -0.2 871,557 - HP15_854 0.24 +0.2 871,562 - HP15_854 0.25 -0.5 871,566 + HP15_854 0.25 +0.1 871,567 - HP15_854 0.25 -0.1 871,574 - HP15_854 0.26 -1.3 871,757 - HP15_854 0.48 -0.3 871,798 + HP15_854 0.52 -0.7 871,798 + HP15_854 0.52 -0.1 871,848 - HP15_854 0.58 +2.4 871,931 + HP15_854 0.68 +2.2 872,043 + HP15_854 0.81 -0.2 872,048 + HP15_854 0.81 +1.5 872,165 + +0.0 872,165 + -0.0 872,272 + -0.4
Or see this region's nucleotide sequence