Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_842 and HP15_843 are separated by 40 nucleotides HP15_843 and HP15_844 are separated by 3 nucleotides HP15_844 and HP15_845 are separated by 226 nucleotides
HP15_842: HP15_842 - phosphoglycerate mutase family protein, at 861,525 to 862,097
_842
HP15_843: HP15_843 - PhnA protein, at 862,138 to 862,476
_843
HP15_844: HP15_844 - protein containing DUF533, at 862,480 to 863,199
_844
HP15_845: HP15_845 - sensory box/GGDEF family protein, at 863,426 to 865,702
_845
Position (kb) 862
863
864 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 861.614 kb on - strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.654 kb on + strand, within HP15_842 at 861.751 kb on - strand, within HP15_842 at 861.778 kb on + strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 862.068 kb on + strand at 862.154 kb on - strand at 862.198 kb on + strand, within HP15_843 at 862.203 kb on + strand, within HP15_843 at 862.343 kb on - strand, within HP15_843 at 862.522 kb on + strand at 862.573 kb on - strand, within HP15_844 at 862.633 kb on + strand, within HP15_844 at 862.644 kb on + strand, within HP15_844 at 862.665 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.670 kb on - strand, within HP15_844 at 862.682 kb on - strand, within HP15_844 at 862.796 kb on + strand, within HP15_844 at 862.841 kb on + strand, within HP15_844 at 862.841 kb on - strand, within HP15_844 at 863.000 kb on - strand, within HP15_844 at 863.092 kb on - strand, within HP15_844 at 863.106 kb on - strand, within HP15_844 at 863.132 kb on - strand at 863.146 kb on - strand at 863.153 kb on + strand at 863.161 kb on - strand at 863.184 kb on - strand at 863.372 kb on + strand at 863.380 kb on - strand at 863.463 kb on + strand at 863.499 kb on - strand at 863.504 kb on - strand at 863.564 kb on - strand at 863.578 kb on + strand at 863.627 kb on - strand at 863.695 kb on + strand, within HP15_845 at 863.794 kb on + strand, within HP15_845 at 863.896 kb on + strand, within HP15_845 at 863.903 kb on - strand, within HP15_845 at 863.904 kb on - strand, within HP15_845 at 864.000 kb on - strand, within HP15_845 at 864.002 kb on + strand, within HP15_845 at 864.024 kb on + strand, within HP15_845 at 864.092 kb on - strand, within HP15_845 at 864.138 kb on + strand, within HP15_845 at 864.168 kb on + strand, within HP15_845 at 864.168 kb on + strand, within HP15_845
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 861,614 - HP15_842 0.16 -0.9 861,636 + HP15_842 0.19 -1.6 861,636 + HP15_842 0.19 -0.2 861,654 + HP15_842 0.23 -0.2 861,751 - HP15_842 0.39 -0.2 861,778 + HP15_842 0.44 +1.0 861,999 - HP15_842 0.83 +0.4 861,999 - HP15_842 0.83 +3.8 862,068 + +0.3 862,154 - +2.2 862,198 + HP15_843 0.18 +1.7 862,203 + HP15_843 0.19 +1.4 862,343 - HP15_843 0.60 -0.5 862,522 + -1.0 862,573 - HP15_844 0.13 +0.0 862,633 + HP15_844 0.21 -1.0 862,644 + HP15_844 0.23 -0.5 862,665 - HP15_844 0.26 -2.2 862,670 - HP15_844 0.26 -0.2 862,670 - HP15_844 0.26 +2.6 862,682 - HP15_844 0.28 +0.1 862,796 + HP15_844 0.44 -0.4 862,841 + HP15_844 0.50 +1.8 862,841 - HP15_844 0.50 -0.3 863,000 - HP15_844 0.72 -0.0 863,092 - HP15_844 0.85 +0.6 863,106 - HP15_844 0.87 -2.4 863,132 - +0.2 863,146 - +1.8 863,153 + -0.3 863,161 - +1.2 863,184 - +1.9 863,372 + +1.7 863,380 - +1.6 863,463 + +1.8 863,499 - +1.4 863,504 - +1.8 863,564 - +0.0 863,578 + -0.5 863,627 - -1.3 863,695 + HP15_845 0.12 +1.7 863,794 + HP15_845 0.16 -0.0 863,896 + HP15_845 0.21 +0.3 863,903 - HP15_845 0.21 +1.4 863,904 - HP15_845 0.21 -0.9 864,000 - HP15_845 0.25 -0.8 864,002 + HP15_845 0.25 +0.5 864,024 + HP15_845 0.26 -0.2 864,092 - HP15_845 0.29 +0.2 864,138 + HP15_845 0.31 +1.3 864,168 + HP15_845 0.33 +2.0 864,168 + HP15_845 0.33 +0.0
Or see this region's nucleotide sequence