Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_577 and HP15_578 are separated by 87 nucleotides HP15_578 and HP15_579 are separated by 134 nucleotides HP15_579 and HP15_580 are separated by 74 nucleotides
HP15_577: HP15_577 - mutator MutT protein, at 599,028 to 599,999
_577
HP15_578: HP15_578 - molybdenum cofactor biosynthesis protein C, at 600,087 to 600,569
_578
HP15_579: HP15_579 - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein, at 600,704 to 601,318
_579
HP15_580: HP15_580 - 1-deoxy-D-xylulose-5-phosphate synthase, at 601,393 to 603,324
_580
Position (kb) 600
601 Strain fitness (log2 ratio) -1
0
1
2 at 599.378 kb on + strand, within HP15_577 at 599.438 kb on - strand, within HP15_577 at 600.111 kb on - strand at 600.117 kb on + strand at 600.125 kb on - strand at 600.130 kb on + strand at 600.306 kb on + strand, within HP15_578 at 600.314 kb on - strand, within HP15_578 at 600.563 kb on + strand at 600.637 kb on - strand at 600.694 kb on + strand at 601.322 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 599,378 + HP15_577 0.36 -0.0 599,438 - HP15_577 0.42 -1.0 600,111 - -0.8 600,117 + +2.6 600,125 - +2.2 600,130 + -0.1 600,306 + HP15_578 0.45 -0.6 600,314 - HP15_578 0.47 -0.4 600,563 + -1.6 600,637 - +2.6 600,694 + -0.7 601,322 + -0.7
Or see this region's nucleotide sequence