Strain Fitness in Marinobacter adhaerens HP15 around HP15_48

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_46 and HP15_47 overlap by 1 nucleotidesHP15_47 and HP15_48 overlap by 4 nucleotidesHP15_48 and HP15_49 overlap by 4 nucleotides HP15_46: HP15_46 - amidohydrolase 2, at 50,005 to 51,081 _46 HP15_47: HP15_47 - fumarylacetoacetate (FAA) hydrolase, at 51,081 to 51,947 _47 HP15_48: HP15_48 - 3-hydroxybutyryl-CoA dehydrogenase, at 51,944 to 52,849 _48 HP15_49: HP15_49 - acetyl-CoA acetyltransferase, at 52,846 to 54,021 _49 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 51.042 kb on - strandat 51.069 kb on + strandat 51.069 kb on + strandat 51.069 kb on + strandat 51.069 kb on + strandat 51.077 kb on - strandat 51.077 kb on - strandat 51.080 kb on + strandat 51.088 kb on - strandat 51.125 kb on + strandat 51.125 kb on + strandat 51.189 kb on + strand, within HP15_47at 51.212 kb on + strand, within HP15_47at 51.225 kb on - strand, within HP15_47at 51.232 kb on + strand, within HP15_47at 51.282 kb on - strand, within HP15_47at 51.381 kb on + strand, within HP15_47at 51.419 kb on + strand, within HP15_47at 51.439 kb on - strand, within HP15_47at 51.521 kb on - strand, within HP15_47at 51.569 kb on + strand, within HP15_47at 51.633 kb on - strand, within HP15_47at 51.665 kb on + strand, within HP15_47at 51.680 kb on + strand, within HP15_47at 51.727 kb on + strand, within HP15_47at 51.761 kb on - strand, within HP15_47at 51.801 kb on + strand, within HP15_47at 51.860 kb on + strand, within HP15_47at 51.976 kb on - strandat 52.028 kb on + strandat 52.030 kb on + strandat 52.051 kb on - strand, within HP15_48at 52.056 kb on + strand, within HP15_48at 52.084 kb on - strand, within HP15_48at 52.223 kb on - strand, within HP15_48at 52.311 kb on - strand, within HP15_48at 52.396 kb on + strand, within HP15_48at 52.409 kb on + strand, within HP15_48at 52.444 kb on - strand, within HP15_48at 52.455 kb on + strand, within HP15_48at 52.455 kb on + strand, within HP15_48at 52.465 kb on + strand, within HP15_48at 52.465 kb on + strand, within HP15_48at 52.538 kb on + strand, within HP15_48at 52.561 kb on - strand, within HP15_48at 52.574 kb on + strand, within HP15_48at 52.624 kb on - strand, within HP15_48at 52.627 kb on + strand, within HP15_48at 52.667 kb on + strand, within HP15_48at 52.676 kb on - strand, within HP15_48at 52.698 kb on + strand, within HP15_48at 52.779 kb on + strandat 52.793 kb on - strandat 52.834 kb on + strandat 52.841 kb on - strandat 52.913 kb on + strandat 52.919 kb on + strandat 52.999 kb on + strand, within HP15_49at 53.058 kb on + strand, within HP15_49at 53.059 kb on - strand, within HP15_49at 53.059 kb on - strand, within HP15_49at 53.059 kb on - strand, within HP15_49at 53.078 kb on + strand, within HP15_49at 53.081 kb on - strand, within HP15_49at 53.128 kb on + strand, within HP15_49at 53.128 kb on + strand, within HP15_49at 53.128 kb on + strand, within HP15_49at 53.128 kb on + strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.136 kb on - strand, within HP15_49at 53.233 kb on - strand, within HP15_49at 53.237 kb on + strand, within HP15_49at 53.297 kb on - strand, within HP15_49at 53.338 kb on - strand, within HP15_49at 53.736 kb on - strand, within HP15_49at 53.736 kb on - strand, within HP15_49at 53.819 kb on - strand, within HP15_49at 53.824 kb on - strand, within HP15_49at 53.824 kb on - strand, within HP15_49at 53.826 kb on + strand, within HP15_49at 53.826 kb on + strand, within HP15_49

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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51,042 - +0.3
51,069 + +2.3
51,069 + -0.6
51,069 + +1.0
51,069 + -0.5
51,077 - +0.1
51,077 - +2.1
51,080 + +1.3
51,088 - +0.1
51,125 + +0.8
51,125 + +0.7
51,189 + HP15_47 0.12 -0.4
51,212 + HP15_47 0.15 +2.4
51,225 - HP15_47 0.17 -0.5
51,232 + HP15_47 0.17 -0.1
51,282 - HP15_47 0.23 +1.6
51,381 + HP15_47 0.35 -0.2
51,419 + HP15_47 0.39 +2.1
51,439 - HP15_47 0.41 -0.2
51,521 - HP15_47 0.51 -0.3
51,569 + HP15_47 0.56 -0.0
51,633 - HP15_47 0.64 -0.6
51,665 + HP15_47 0.67 +1.4
51,680 + HP15_47 0.69 -0.5
51,727 + HP15_47 0.75 +0.5
51,761 - HP15_47 0.78 -0.4
51,801 + HP15_47 0.83 -0.8
51,860 + HP15_47 0.90 +1.7
51,976 - -0.1
52,028 + +1.8
52,030 + -0.3
52,051 - HP15_48 0.12 -0.3
52,056 + HP15_48 0.12 +1.6
52,084 - HP15_48 0.15 -0.6
52,223 - HP15_48 0.31 -0.6
52,311 - HP15_48 0.41 -0.4
52,396 + HP15_48 0.50 +0.0
52,409 + HP15_48 0.51 +2.0
52,444 - HP15_48 0.55 +2.1
52,455 + HP15_48 0.56 -1.0
52,455 + HP15_48 0.56 -1.9
52,465 + HP15_48 0.58 +1.6
52,465 + HP15_48 0.58 +0.3
52,538 + HP15_48 0.66 +0.3
52,561 - HP15_48 0.68 +1.7
52,574 + HP15_48 0.70 +1.8
52,624 - HP15_48 0.75 +0.8
52,627 + HP15_48 0.75 +2.3
52,667 + HP15_48 0.80 +1.9
52,676 - HP15_48 0.81 +1.9
52,698 + HP15_48 0.83 -1.8
52,779 + -0.2
52,793 - +0.4
52,834 + -0.5
52,841 - +0.2
52,913 + +2.2
52,919 + -0.0
52,999 + HP15_49 0.13 +1.7
53,058 + HP15_49 0.18 -0.3
53,059 - HP15_49 0.18 +1.9
53,059 - HP15_49 0.18 +0.1
53,059 - HP15_49 0.18 +1.1
53,078 + HP15_49 0.20 +1.7
53,081 - HP15_49 0.20 +1.9
53,128 + HP15_49 0.24 -0.4
53,128 + HP15_49 0.24 +0.0
53,128 + HP15_49 0.24 +1.7
53,128 + HP15_49 0.24 +1.8
53,136 - HP15_49 0.25 +0.4
53,136 - HP15_49 0.25 +1.1
53,136 - HP15_49 0.25 +2.1
53,136 - HP15_49 0.25 -1.1
53,136 - HP15_49 0.25 +0.9
53,136 - HP15_49 0.25 -0.7
53,233 - HP15_49 0.33 +0.0
53,237 + HP15_49 0.33 -0.1
53,297 - HP15_49 0.38 -0.6
53,338 - HP15_49 0.42 -0.2
53,736 - HP15_49 0.76 +1.3
53,736 - HP15_49 0.76 -0.5
53,819 - HP15_49 0.83 -0.7
53,824 - HP15_49 0.83 +1.9
53,824 - HP15_49 0.83 +0.7
53,826 + HP15_49 0.83 +0.3
53,826 + HP15_49 0.83 -1.1

Or see this region's nucleotide sequence