Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g42 and HP15_p42g43 are separated by 11 nucleotides HP15_p42g43 and HP15_p42g44 are separated by 9 nucleotides HP15_p42g44 and HP15_p42g45 are separated by 18 nucleotides
HP15_p42g42: HP15_p42g42 - conjugal transfer, TrbL, at 31,529 to 33,385
_p42g42
HP15_p42g43: HP15_p42g43 - TrbK entry exclusion protein-like protein, at 33,397 to 33,624
_p42g43
HP15_p42g44: HP15_p42g44 - mating pair formation protein TrbJ, at 33,634 to 34,395
_p42g44
HP15_p42g45: HP15_p42g45 - conjugation TrbI family protein, at 34,414 to 35,841
_p42g45
Position (kb)
33
34
35 Strain fitness (log2 ratio)
-1
0
1
2 at 32.714 kb on - strand, within HP15_p42g42 at 32.736 kb on + strand, within HP15_p42g42 at 32.758 kb on + strand, within HP15_p42g42 at 32.758 kb on + strand, within HP15_p42g42 at 32.765 kb on + strand, within HP15_p42g42 at 32.864 kb on - strand, within HP15_p42g42 at 32.887 kb on - strand, within HP15_p42g42 at 32.992 kb on + strand, within HP15_p42g42 at 33.046 kb on - strand, within HP15_p42g42 at 33.066 kb on - strand, within HP15_p42g42 at 33.144 kb on + strand, within HP15_p42g42 at 33.147 kb on - strand, within HP15_p42g42 at 33.152 kb on - strand, within HP15_p42g42 at 33.152 kb on - strand, within HP15_p42g42 at 33.154 kb on + strand, within HP15_p42g42 at 33.179 kb on - strand, within HP15_p42g42 at 33.266 kb on + strand at 33.360 kb on + strand at 33.368 kb on - strand at 33.434 kb on + strand, within HP15_p42g43 at 33.493 kb on - strand, within HP15_p42g43 at 33.574 kb on - strand, within HP15_p42g43 at 33.579 kb on + strand, within HP15_p42g43 at 33.641 kb on - strand at 33.645 kb on + strand at 33.653 kb on - strand at 33.654 kb on - strand at 33.684 kb on - strand at 33.689 kb on - strand at 33.697 kb on + strand at 33.790 kb on + strand, within HP15_p42g44 at 34.009 kb on - strand, within HP15_p42g44 at 34.021 kb on + strand, within HP15_p42g44 at 34.045 kb on - strand, within HP15_p42g44 at 34.066 kb on - strand, within HP15_p42g44 at 34.068 kb on + strand, within HP15_p42g44 at 34.120 kb on - strand, within HP15_p42g44 at 34.172 kb on + strand, within HP15_p42g44 at 34.194 kb on - strand, within HP15_p42g44 at 34.290 kb on + strand, within HP15_p42g44 at 34.290 kb on + strand, within HP15_p42g44 at 34.290 kb on + strand, within HP15_p42g44 at 34.332 kb on + strand at 34.335 kb on - strand at 34.357 kb on + strand at 34.362 kb on + strand at 34.399 kb on + strand at 34.419 kb on + strand at 34.511 kb on + strand at 34.521 kb on - strand at 34.596 kb on + strand, within HP15_p42g45 at 34.635 kb on + strand, within HP15_p42g45 at 34.643 kb on - strand, within HP15_p42g45 at 34.658 kb on + strand, within HP15_p42g45 at 34.696 kb on - strand, within HP15_p42g45 at 34.697 kb on - strand, within HP15_p42g45 at 34.802 kb on - strand, within HP15_p42g45 at 34.911 kb on + strand, within HP15_p42g45 at 34.955 kb on + strand, within HP15_p42g45 at 34.998 kb on + strand, within HP15_p42g45 at 34.998 kb on + strand, within HP15_p42g45 at 35.008 kb on + strand, within HP15_p42g45 at 35.091 kb on + strand, within HP15_p42g45 at 35.218 kb on + strand, within HP15_p42g45 at 35.306 kb on - strand, within HP15_p42g45 at 35.306 kb on - strand, within HP15_p42g45 at 35.328 kb on + strand, within HP15_p42g45 at 35.336 kb on - strand, within HP15_p42g45
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 32,714 - HP15_p42g42 0.64 +2.2 32,736 + HP15_p42g42 0.65 +1.7 32,758 + HP15_p42g42 0.66 -0.2 32,758 + HP15_p42g42 0.66 -0.1 32,765 + HP15_p42g42 0.67 +2.6 32,864 - HP15_p42g42 0.72 -0.0 32,887 - HP15_p42g42 0.73 -0.4 32,992 + HP15_p42g42 0.79 +0.2 33,046 - HP15_p42g42 0.82 -0.8 33,066 - HP15_p42g42 0.83 -0.3 33,144 + HP15_p42g42 0.87 +2.0 33,147 - HP15_p42g42 0.87 +0.7 33,152 - HP15_p42g42 0.87 +1.5 33,152 - HP15_p42g42 0.87 -0.3 33,154 + HP15_p42g42 0.88 -0.3 33,179 - HP15_p42g42 0.89 -0.4 33,266 + +1.3 33,360 + +1.3 33,368 - -0.7 33,434 + HP15_p42g43 0.16 -0.2 33,493 - HP15_p42g43 0.42 +0.5 33,574 - HP15_p42g43 0.78 +1.5 33,579 + HP15_p42g43 0.80 -1.7 33,641 - -0.3 33,645 + -0.1 33,653 - +1.5 33,654 - +1.3 33,684 - +0.9 33,689 - +1.9 33,697 + +1.9 33,790 + HP15_p42g44 0.20 -0.5 34,009 - HP15_p42g44 0.49 +2.3 34,021 + HP15_p42g44 0.51 -1.1 34,045 - HP15_p42g44 0.54 -0.6 34,066 - HP15_p42g44 0.57 -0.2 34,068 + HP15_p42g44 0.57 -0.4 34,120 - HP15_p42g44 0.64 -0.5 34,172 + HP15_p42g44 0.71 -0.8 34,194 - HP15_p42g44 0.73 +1.2 34,290 + HP15_p42g44 0.86 +1.4 34,290 + HP15_p42g44 0.86 -0.3 34,290 + HP15_p42g44 0.86 -0.6 34,332 + +0.0 34,335 - +1.9 34,357 + -0.5 34,362 + +0.5 34,399 + -1.1 34,419 + -0.4 34,511 + -0.1 34,521 - +1.3 34,596 + HP15_p42g45 0.13 +0.7 34,635 + HP15_p42g45 0.15 -0.4 34,643 - HP15_p42g45 0.16 +2.3 34,658 + HP15_p42g45 0.17 -1.0 34,696 - HP15_p42g45 0.20 +0.2 34,697 - HP15_p42g45 0.20 -0.2 34,802 - HP15_p42g45 0.27 +0.2 34,911 + HP15_p42g45 0.35 -0.3 34,955 + HP15_p42g45 0.38 +2.0 34,998 + HP15_p42g45 0.41 +1.6 34,998 + HP15_p42g45 0.41 +2.2 35,008 + HP15_p42g45 0.42 +1.7 35,091 + HP15_p42g45 0.47 +1.5 35,218 + HP15_p42g45 0.56 +0.0 35,306 - HP15_p42g45 0.62 -0.8 35,306 - HP15_p42g45 0.62 -0.4 35,328 + HP15_p42g45 0.64 -0.1 35,336 - HP15_p42g45 0.65 -0.8
Or see this region's nucleotide sequence