Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g44

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g42 and HP15_p42g43 are separated by 11 nucleotidesHP15_p42g43 and HP15_p42g44 are separated by 9 nucleotidesHP15_p42g44 and HP15_p42g45 are separated by 18 nucleotides HP15_p42g42: HP15_p42g42 - conjugal transfer, TrbL, at 31,529 to 33,385 _p42g42 HP15_p42g43: HP15_p42g43 - TrbK entry exclusion protein-like protein, at 33,397 to 33,624 _p42g43 HP15_p42g44: HP15_p42g44 - mating pair formation protein TrbJ, at 33,634 to 34,395 _p42g44 HP15_p42g45: HP15_p42g45 - conjugation TrbI family protein, at 34,414 to 35,841 _p42g45 Position (kb) 33 34 35Strain fitness (log2 ratio) -1 0 1 2at 32.714 kb on - strand, within HP15_p42g42at 32.736 kb on + strand, within HP15_p42g42at 32.758 kb on + strand, within HP15_p42g42at 32.758 kb on + strand, within HP15_p42g42at 32.765 kb on + strand, within HP15_p42g42at 32.864 kb on - strand, within HP15_p42g42at 32.887 kb on - strand, within HP15_p42g42at 32.992 kb on + strand, within HP15_p42g42at 33.046 kb on - strand, within HP15_p42g42at 33.066 kb on - strand, within HP15_p42g42at 33.144 kb on + strand, within HP15_p42g42at 33.147 kb on - strand, within HP15_p42g42at 33.152 kb on - strand, within HP15_p42g42at 33.152 kb on - strand, within HP15_p42g42at 33.154 kb on + strand, within HP15_p42g42at 33.179 kb on - strand, within HP15_p42g42at 33.266 kb on + strandat 33.360 kb on + strandat 33.368 kb on - strandat 33.434 kb on + strand, within HP15_p42g43at 33.493 kb on - strand, within HP15_p42g43at 33.574 kb on - strand, within HP15_p42g43at 33.579 kb on + strand, within HP15_p42g43at 33.641 kb on - strandat 33.645 kb on + strandat 33.653 kb on - strandat 33.654 kb on - strandat 33.684 kb on - strandat 33.689 kb on - strandat 33.697 kb on + strandat 33.790 kb on + strand, within HP15_p42g44at 34.009 kb on - strand, within HP15_p42g44at 34.021 kb on + strand, within HP15_p42g44at 34.045 kb on - strand, within HP15_p42g44at 34.066 kb on - strand, within HP15_p42g44at 34.068 kb on + strand, within HP15_p42g44at 34.120 kb on - strand, within HP15_p42g44at 34.172 kb on + strand, within HP15_p42g44at 34.194 kb on - strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.290 kb on + strand, within HP15_p42g44at 34.332 kb on + strandat 34.335 kb on - strandat 34.357 kb on + strandat 34.362 kb on + strandat 34.399 kb on + strandat 34.419 kb on + strandat 34.511 kb on + strandat 34.521 kb on - strandat 34.596 kb on + strand, within HP15_p42g45at 34.635 kb on + strand, within HP15_p42g45at 34.643 kb on - strand, within HP15_p42g45at 34.658 kb on + strand, within HP15_p42g45at 34.696 kb on - strand, within HP15_p42g45at 34.697 kb on - strand, within HP15_p42g45at 34.802 kb on - strand, within HP15_p42g45at 34.911 kb on + strand, within HP15_p42g45at 34.955 kb on + strand, within HP15_p42g45at 34.998 kb on + strand, within HP15_p42g45at 34.998 kb on + strand, within HP15_p42g45at 35.008 kb on + strand, within HP15_p42g45at 35.091 kb on + strand, within HP15_p42g45at 35.218 kb on + strand, within HP15_p42g45at 35.306 kb on - strand, within HP15_p42g45at 35.306 kb on - strand, within HP15_p42g45at 35.328 kb on + strand, within HP15_p42g45at 35.336 kb on - strand, within HP15_p42g45

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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32,714 - HP15_p42g42 0.64 +2.2
32,736 + HP15_p42g42 0.65 +1.7
32,758 + HP15_p42g42 0.66 -0.2
32,758 + HP15_p42g42 0.66 -0.1
32,765 + HP15_p42g42 0.67 +2.6
32,864 - HP15_p42g42 0.72 -0.0
32,887 - HP15_p42g42 0.73 -0.4
32,992 + HP15_p42g42 0.79 +0.2
33,046 - HP15_p42g42 0.82 -0.8
33,066 - HP15_p42g42 0.83 -0.3
33,144 + HP15_p42g42 0.87 +2.0
33,147 - HP15_p42g42 0.87 +0.7
33,152 - HP15_p42g42 0.87 +1.5
33,152 - HP15_p42g42 0.87 -0.3
33,154 + HP15_p42g42 0.88 -0.3
33,179 - HP15_p42g42 0.89 -0.4
33,266 + +1.3
33,360 + +1.3
33,368 - -0.7
33,434 + HP15_p42g43 0.16 -0.2
33,493 - HP15_p42g43 0.42 +0.5
33,574 - HP15_p42g43 0.78 +1.5
33,579 + HP15_p42g43 0.80 -1.7
33,641 - -0.3
33,645 + -0.1
33,653 - +1.5
33,654 - +1.3
33,684 - +0.9
33,689 - +1.9
33,697 + +1.9
33,790 + HP15_p42g44 0.20 -0.5
34,009 - HP15_p42g44 0.49 +2.3
34,021 + HP15_p42g44 0.51 -1.1
34,045 - HP15_p42g44 0.54 -0.6
34,066 - HP15_p42g44 0.57 -0.2
34,068 + HP15_p42g44 0.57 -0.4
34,120 - HP15_p42g44 0.64 -0.5
34,172 + HP15_p42g44 0.71 -0.8
34,194 - HP15_p42g44 0.73 +1.2
34,290 + HP15_p42g44 0.86 +1.4
34,290 + HP15_p42g44 0.86 -0.3
34,290 + HP15_p42g44 0.86 -0.6
34,332 + +0.0
34,335 - +1.9
34,357 + -0.5
34,362 + +0.5
34,399 + -1.1
34,419 + -0.4
34,511 + -0.1
34,521 - +1.3
34,596 + HP15_p42g45 0.13 +0.7
34,635 + HP15_p42g45 0.15 -0.4
34,643 - HP15_p42g45 0.16 +2.3
34,658 + HP15_p42g45 0.17 -1.0
34,696 - HP15_p42g45 0.20 +0.2
34,697 - HP15_p42g45 0.20 -0.2
34,802 - HP15_p42g45 0.27 +0.2
34,911 + HP15_p42g45 0.35 -0.3
34,955 + HP15_p42g45 0.38 +2.0
34,998 + HP15_p42g45 0.41 +1.6
34,998 + HP15_p42g45 0.41 +2.2
35,008 + HP15_p42g45 0.42 +1.7
35,091 + HP15_p42g45 0.47 +1.5
35,218 + HP15_p42g45 0.56 +0.0
35,306 - HP15_p42g45 0.62 -0.8
35,306 - HP15_p42g45 0.62 -0.4
35,328 + HP15_p42g45 0.64 -0.1
35,336 - HP15_p42g45 0.65 -0.8

Or see this region's nucleotide sequence