Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g17

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g15 and HP15_p42g16 are separated by 41 nucleotidesHP15_p42g16 and HP15_p42g17 are separated by 21 nucleotidesHP15_p42g17 and HP15_p42g18 are separated by 50 nucleotidesHP15_p42g18 and HP15_p42g19 overlap by 1 nucleotides HP15_p42g15: HP15_p42g15 - KfrA protein, at 9,615 to 10,646 _p42g15 HP15_p42g16: HP15_p42g16 - conjugal transfer protein TraO, at 10,688 to 11,152 _p42g16 HP15_p42g17: HP15_p42g17 - traN-like protein, at 11,174 to 12,502 _p42g17 HP15_p42g18: HP15_p42g18 - traM-like protein, at 12,553 to 12,990 _p42g18 HP15_p42g19: HP15_p42g19 - transfer origin protein, TraL, at 12,990 to 13,715 _p42g19 Position (kb) 11 12 13Strain fitness (log2 ratio) -2 -1 0 1 2 3at 10.189 kb on + strand, within HP15_p42g15at 10.199 kb on - strand, within HP15_p42g15at 10.244 kb on + strand, within HP15_p42g15at 10.253 kb on - strand, within HP15_p42g15at 10.298 kb on + strand, within HP15_p42g15at 10.412 kb on + strand, within HP15_p42g15at 10.412 kb on + strand, within HP15_p42g15at 10.548 kb on + strandat 10.585 kb on + strandat 10.633 kb on - strandat 10.710 kb on + strandat 10.789 kb on + strand, within HP15_p42g16at 10.789 kb on + strand, within HP15_p42g16at 10.856 kb on + strand, within HP15_p42g16at 10.864 kb on - strand, within HP15_p42g16at 10.990 kb on + strand, within HP15_p42g16at 11.106 kb on + strandat 11.106 kb on - strandat 11.188 kb on + strandat 11.283 kb on - strandat 11.363 kb on - strand, within HP15_p42g17at 11.384 kb on + strand, within HP15_p42g17at 11.384 kb on + strand, within HP15_p42g17at 11.472 kb on + strand, within HP15_p42g17at 11.480 kb on - strand, within HP15_p42g17at 11.490 kb on + strand, within HP15_p42g17at 11.503 kb on - strand, within HP15_p42g17at 11.534 kb on + strand, within HP15_p42g17at 11.537 kb on - strand, within HP15_p42g17at 11.571 kb on + strand, within HP15_p42g17at 11.689 kb on - strand, within HP15_p42g17at 11.722 kb on + strand, within HP15_p42g17at 11.966 kb on + strand, within HP15_p42g17at 11.982 kb on + strand, within HP15_p42g17at 11.990 kb on - strand, within HP15_p42g17at 12.022 kb on + strand, within HP15_p42g17at 12.050 kb on - strand, within HP15_p42g17at 12.146 kb on - strand, within HP15_p42g17at 12.190 kb on + strand, within HP15_p42g17at 12.190 kb on + strand, within HP15_p42g17at 12.205 kb on - strand, within HP15_p42g17at 12.212 kb on + strand, within HP15_p42g17at 12.222 kb on + strand, within HP15_p42g17at 12.265 kb on - strand, within HP15_p42g17at 12.268 kb on + strand, within HP15_p42g17at 12.268 kb on + strand, within HP15_p42g17at 12.268 kb on + strand, within HP15_p42g17at 12.268 kb on + strand, within HP15_p42g17at 12.268 kb on + strand, within HP15_p42g17at 12.276 kb on - strand, within HP15_p42g17at 12.276 kb on - strand, within HP15_p42g17at 12.305 kb on - strand, within HP15_p42g17at 12.318 kb on + strand, within HP15_p42g17at 12.365 kb on - strand, within HP15_p42g17at 12.374 kb on + strandat 12.392 kb on - strandat 12.450 kb on + strandat 12.475 kb on - strandat 12.479 kb on + strandat 12.487 kb on - strandat 12.502 kb on - strandat 12.502 kb on - strandat 12.627 kb on + strand, within HP15_p42g18at 12.627 kb on + strand, within HP15_p42g18at 12.646 kb on - strand, within HP15_p42g18at 12.685 kb on - strand, within HP15_p42g18at 12.809 kb on - strand, within HP15_p42g18at 12.879 kb on + strand, within HP15_p42g18at 12.933 kb on + strand, within HP15_p42g18at 12.933 kb on + strand, within HP15_p42g18at 12.935 kb on + strand, within HP15_p42g18at 12.935 kb on + strand, within HP15_p42g18at 12.935 kb on + strand, within HP15_p42g18at 12.935 kb on + strand, within HP15_p42g18at 12.941 kb on - strand, within HP15_p42g18at 12.943 kb on + strand, within HP15_p42g18at 12.998 kb on - strandat 13.008 kb on + strandat 13.140 kb on + strand, within HP15_p42g19at 13.244 kb on + strand, within HP15_p42g19at 13.255 kb on + strand, within HP15_p42g19at 13.255 kb on + strand, within HP15_p42g19at 13.257 kb on - strand, within HP15_p42g19at 13.295 kb on + strand, within HP15_p42g19at 13.349 kb on + strand, within HP15_p42g19at 13.441 kb on + strand, within HP15_p42g19

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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10,189 + HP15_p42g15 0.56 +0.3
10,199 - HP15_p42g15 0.57 -0.1
10,244 + HP15_p42g15 0.61 +1.8
10,253 - HP15_p42g15 0.62 -0.8
10,298 + HP15_p42g15 0.66 +2.0
10,412 + HP15_p42g15 0.77 -0.3
10,412 + HP15_p42g15 0.77 +1.8
10,548 + +1.4
10,585 + +2.2
10,633 - -0.3
10,710 + +0.0
10,789 + HP15_p42g16 0.22 +0.5
10,789 + HP15_p42g16 0.22 -0.0
10,856 + HP15_p42g16 0.36 +0.0
10,864 - HP15_p42g16 0.38 -1.1
10,990 + HP15_p42g16 0.65 -1.0
11,106 + -0.1
11,106 - +2.3
11,188 + +1.2
11,283 - +0.0
11,363 - HP15_p42g17 0.14 +0.3
11,384 + HP15_p42g17 0.16 -0.9
11,384 + HP15_p42g17 0.16 +2.1
11,472 + HP15_p42g17 0.22 +2.1
11,480 - HP15_p42g17 0.23 -1.4
11,490 + HP15_p42g17 0.24 +1.0
11,503 - HP15_p42g17 0.25 -0.8
11,534 + HP15_p42g17 0.27 +2.8
11,537 - HP15_p42g17 0.27 -1.0
11,571 + HP15_p42g17 0.30 -0.6
11,689 - HP15_p42g17 0.39 -0.4
11,722 + HP15_p42g17 0.41 +0.5
11,966 + HP15_p42g17 0.60 +0.2
11,982 + HP15_p42g17 0.61 +1.6
11,990 - HP15_p42g17 0.61 -1.3
12,022 + HP15_p42g17 0.64 +1.8
12,050 - HP15_p42g17 0.66 -1.3
12,146 - HP15_p42g17 0.73 +0.0
12,190 + HP15_p42g17 0.76 +1.4
12,190 + HP15_p42g17 0.76 +0.7
12,205 - HP15_p42g17 0.78 -0.5
12,212 + HP15_p42g17 0.78 -0.3
12,222 + HP15_p42g17 0.79 +0.5
12,265 - HP15_p42g17 0.82 -2.0
12,268 + HP15_p42g17 0.82 -0.4
12,268 + HP15_p42g17 0.82 -0.6
12,268 + HP15_p42g17 0.82 +1.9
12,268 + HP15_p42g17 0.82 +1.6
12,268 + HP15_p42g17 0.82 +1.7
12,276 - HP15_p42g17 0.83 +0.3
12,276 - HP15_p42g17 0.83 -1.1
12,305 - HP15_p42g17 0.85 +1.9
12,318 + HP15_p42g17 0.86 -1.1
12,365 - HP15_p42g17 0.90 -0.3
12,374 + +3.3
12,392 - -0.2
12,450 + +1.8
12,475 - -0.5
12,479 + -0.8
12,487 - -0.1
12,502 - -1.8
12,502 - +0.2
12,627 + HP15_p42g18 0.17 -0.5
12,627 + HP15_p42g18 0.17 -0.3
12,646 - HP15_p42g18 0.21 -0.5
12,685 - HP15_p42g18 0.30 -0.1
12,809 - HP15_p42g18 0.58 -0.3
12,879 + HP15_p42g18 0.74 -1.1
12,933 + HP15_p42g18 0.87 -1.0
12,933 + HP15_p42g18 0.87 -0.4
12,935 + HP15_p42g18 0.87 -0.2
12,935 + HP15_p42g18 0.87 +0.3
12,935 + HP15_p42g18 0.87 -0.4
12,935 + HP15_p42g18 0.87 +1.6
12,941 - HP15_p42g18 0.89 -0.2
12,943 + HP15_p42g18 0.89 -0.5
12,998 - +1.1
13,008 + +1.9
13,140 + HP15_p42g19 0.21 +1.7
13,244 + HP15_p42g19 0.35 +1.5
13,255 + HP15_p42g19 0.37 +1.3
13,255 + HP15_p42g19 0.37 -1.1
13,257 - HP15_p42g19 0.37 -1.1
13,295 + HP15_p42g19 0.42 +1.2
13,349 + HP15_p42g19 0.49 -0.3
13,441 + HP15_p42g19 0.62 +1.6

Or see this region's nucleotide sequence