Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3867 and HP15_3868 are separated by 2 nucleotides HP15_3868 and HP15_3869 are separated by 150 nucleotides
HP15_3867: HP15_3867 - SPFH domain, Band 7 family protein, at 4,093,705 to 4,094,739
_3867
HP15_3868: HP15_3868 - nodulation efficiency, NfeD-like protein, at 4,094,742 to 4,095,248
_3868
HP15_3869: HP15_3869 - short-chain dehydrogenase/reductase SDR, at 4,095,399 to 4,096,220
_3869
Position (kb)
4094
4095
4096 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4093.824 kb on - strand, within HP15_3867 at 4093.824 kb on - strand, within HP15_3867 at 4093.871 kb on + strand, within HP15_3867 at 4093.996 kb on + strand, within HP15_3867 at 4094.059 kb on - strand, within HP15_3867 at 4094.180 kb on + strand, within HP15_3867 at 4094.251 kb on - strand, within HP15_3867 at 4094.310 kb on + strand, within HP15_3867 at 4094.320 kb on + strand, within HP15_3867 at 4094.520 kb on - strand, within HP15_3867 at 4094.631 kb on + strand, within HP15_3867 at 4094.665 kb on - strand at 4094.705 kb on + strand at 4094.987 kb on + strand, within HP15_3868 at 4094.995 kb on - strand, within HP15_3868 at 4095.095 kb on - strand, within HP15_3868 at 4095.224 kb on - strand at 4095.246 kb on - strand at 4095.403 kb on - strand at 4095.442 kb on + strand at 4095.453 kb on + strand at 4095.461 kb on - strand at 4095.461 kb on - strand at 4095.478 kb on - strand at 4095.494 kb on - strand, within HP15_3869 at 4095.499 kb on + strand, within HP15_3869 at 4095.509 kb on + strand, within HP15_3869 at 4095.637 kb on + strand, within HP15_3869 at 4095.645 kb on - strand, within HP15_3869 at 4095.683 kb on + strand, within HP15_3869 at 4095.698 kb on + strand, within HP15_3869 at 4095.761 kb on - strand, within HP15_3869 at 4095.780 kb on + strand, within HP15_3869 at 4095.831 kb on + strand, within HP15_3869 at 4095.901 kb on - strand, within HP15_3869 at 4096.032 kb on + strand, within HP15_3869 at 4096.046 kb on + strand, within HP15_3869 at 4096.158 kb on + strand at 4096.166 kb on - strand at 4096.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 4,093,824 - HP15_3867 0.11 -0.3 4,093,824 - HP15_3867 0.11 +0.1 4,093,871 + HP15_3867 0.16 +2.1 4,093,996 + HP15_3867 0.28 +0.6 4,094,059 - HP15_3867 0.34 -0.4 4,094,180 + HP15_3867 0.46 -0.2 4,094,251 - HP15_3867 0.53 -0.2 4,094,310 + HP15_3867 0.58 -0.4 4,094,320 + HP15_3867 0.59 +2.1 4,094,520 - HP15_3867 0.79 +1.5 4,094,631 + HP15_3867 0.89 -0.1 4,094,665 - +0.9 4,094,705 + +0.3 4,094,987 + HP15_3868 0.48 -0.7 4,094,995 - HP15_3868 0.50 +2.1 4,095,095 - HP15_3868 0.70 +0.2 4,095,224 - -1.6 4,095,246 - +2.8 4,095,403 - +2.1 4,095,442 + +2.2 4,095,453 + +0.7 4,095,461 - -1.3 4,095,461 - -0.2 4,095,478 - +1.5 4,095,494 - HP15_3869 0.12 -0.4 4,095,499 + HP15_3869 0.12 +2.0 4,095,509 + HP15_3869 0.13 -0.5 4,095,637 + HP15_3869 0.29 -0.4 4,095,645 - HP15_3869 0.30 -0.1 4,095,683 + HP15_3869 0.35 +0.2 4,095,698 + HP15_3869 0.36 +2.2 4,095,761 - HP15_3869 0.44 +4.5 4,095,780 + HP15_3869 0.46 -0.1 4,095,831 + HP15_3869 0.53 +2.1 4,095,901 - HP15_3869 0.61 -1.1 4,096,032 + HP15_3869 0.77 +0.9 4,096,046 + HP15_3869 0.79 +2.6 4,096,158 + +0.0 4,096,166 - +1.9 4,096,168 - -1.1
Or see this region's nucleotide sequence