Experiment: m.b. nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00210 and PGA1_262p00220 overlap by 4 nucleotides PGA1_262p00220 and PGA1_262p00230 overlap by 4 nucleotides
PGA1_262p00210: PGA1_262p00210 - alcohol dehydrogenase AlkJ, at 24,762 to 26,420
_262p00210
PGA1_262p00220: PGA1_262p00220 - putative mandelate racemase/muconate lactonizing enzyme, at 26,417 to 27,592
_262p00220
PGA1_262p00230: PGA1_262p00230 - betaine aldehyde dehydrogenase BetB, at 27,589 to 29,073
_262p00230
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.450 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.474 kb on + strand, within PGA1_262p00210 at 25.672 kb on - strand, within PGA1_262p00210 at 25.677 kb on - strand, within PGA1_262p00210 at 25.716 kb on + strand, within PGA1_262p00210 at 25.778 kb on - strand, within PGA1_262p00210 at 25.778 kb on - strand, within PGA1_262p00210 at 25.778 kb on - strand, within PGA1_262p00210 at 25.778 kb on - strand, within PGA1_262p00210 at 25.783 kb on - strand, within PGA1_262p00210 at 25.783 kb on - strand, within PGA1_262p00210 at 25.864 kb on - strand, within PGA1_262p00210 at 25.875 kb on + strand, within PGA1_262p00210 at 26.011 kb on + strand, within PGA1_262p00210 at 26.078 kb on + strand, within PGA1_262p00210 at 26.078 kb on + strand, within PGA1_262p00210 at 26.163 kb on - strand, within PGA1_262p00210 at 26.308 kb on + strand at 26.372 kb on - strand at 26.411 kb on + strand at 26.455 kb on - strand at 26.544 kb on + strand, within PGA1_262p00220 at 26.594 kb on + strand, within PGA1_262p00220 at 26.629 kb on + strand, within PGA1_262p00220 at 26.655 kb on - strand, within PGA1_262p00220 at 26.826 kb on - strand, within PGA1_262p00220 at 26.928 kb on - strand, within PGA1_262p00220 at 27.002 kb on + strand, within PGA1_262p00220 at 27.002 kb on + strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.010 kb on - strand, within PGA1_262p00220 at 27.123 kb on - strand, within PGA1_262p00220 at 27.144 kb on + strand, within PGA1_262p00220 at 27.159 kb on - strand, within PGA1_262p00220 at 27.193 kb on + strand, within PGA1_262p00220 at 27.251 kb on - strand, within PGA1_262p00220 at 27.333 kb on - strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.390 kb on + strand, within PGA1_262p00220 at 27.398 kb on - strand, within PGA1_262p00220 at 27.400 kb on + strand, within PGA1_262p00220 at 27.419 kb on - strand, within PGA1_262p00220 at 27.419 kb on - strand, within PGA1_262p00220 at 27.447 kb on - strand, within PGA1_262p00220 at 27.447 kb on - strand, within PGA1_262p00220 at 27.523 kb on - strand at 27.530 kb on - strand at 27.563 kb on + strand at 27.576 kb on - strand at 27.676 kb on + strand at 27.730 kb on + strand at 28.180 kb on + strand, within PGA1_262p00230 at 28.312 kb on + strand, within PGA1_262p00230 at 28.334 kb on + strand, within PGA1_262p00230 at 28.336 kb on - strand, within PGA1_262p00230 at 28.352 kb on + strand, within PGA1_262p00230 at 28.366 kb on + strand, within PGA1_262p00230 at 28.373 kb on + strand, within PGA1_262p00230 at 28.438 kb on - strand, within PGA1_262p00230
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 50 mM remove 25,450 + PGA1_262p00210 0.41 -0.8 25,474 + PGA1_262p00210 0.43 -0.1 25,474 + PGA1_262p00210 0.43 -0.3 25,474 + PGA1_262p00210 0.43 -0.5 25,474 + PGA1_262p00210 0.43 -0.8 25,672 - PGA1_262p00210 0.55 +0.8 25,677 - PGA1_262p00210 0.55 +1.2 25,716 + PGA1_262p00210 0.58 +0.2 25,778 - PGA1_262p00210 0.61 +0.2 25,778 - PGA1_262p00210 0.61 -0.8 25,778 - PGA1_262p00210 0.61 +1.3 25,778 - PGA1_262p00210 0.61 -0.4 25,783 - PGA1_262p00210 0.62 -0.8 25,783 - PGA1_262p00210 0.62 +0.6 25,864 - PGA1_262p00210 0.66 -0.6 25,875 + PGA1_262p00210 0.67 -0.2 26,011 + PGA1_262p00210 0.75 +0.2 26,078 + PGA1_262p00210 0.79 +1.4 26,078 + PGA1_262p00210 0.79 +0.2 26,163 - PGA1_262p00210 0.84 -0.2 26,308 + -0.3 26,372 - +0.0 26,411 + +0.5 26,455 - -1.1 26,544 + PGA1_262p00220 0.11 -0.8 26,594 + PGA1_262p00220 0.15 -0.2 26,629 + PGA1_262p00220 0.18 +2.3 26,655 - PGA1_262p00220 0.20 -0.3 26,826 - PGA1_262p00220 0.35 -0.0 26,928 - PGA1_262p00220 0.43 -0.6 27,002 + PGA1_262p00220 0.50 -2.1 27,002 + PGA1_262p00220 0.50 +2.1 27,010 - PGA1_262p00220 0.50 +0.0 27,010 - PGA1_262p00220 0.50 -0.4 27,010 - PGA1_262p00220 0.50 +0.5 27,010 - PGA1_262p00220 0.50 -1.4 27,123 - PGA1_262p00220 0.60 -0.6 27,144 + PGA1_262p00220 0.62 -0.2 27,159 - PGA1_262p00220 0.63 +1.8 27,193 + PGA1_262p00220 0.66 +1.6 27,251 - PGA1_262p00220 0.71 +1.2 27,333 - PGA1_262p00220 0.78 -0.5 27,390 + PGA1_262p00220 0.83 +0.5 27,390 + PGA1_262p00220 0.83 -1.8 27,390 + PGA1_262p00220 0.83 -0.6 27,390 + PGA1_262p00220 0.83 +0.2 27,398 - PGA1_262p00220 0.83 -0.5 27,400 + PGA1_262p00220 0.84 -0.8 27,419 - PGA1_262p00220 0.85 +1.2 27,419 - PGA1_262p00220 0.85 +0.7 27,447 - PGA1_262p00220 0.88 +0.2 27,447 - PGA1_262p00220 0.88 -0.1 27,523 - +0.0 27,530 - -1.8 27,563 + +0.6 27,576 - +0.2 27,676 + -1.6 27,730 + -1.3 28,180 + PGA1_262p00230 0.40 +0.2 28,312 + PGA1_262p00230 0.49 +0.2 28,334 + PGA1_262p00230 0.50 +1.2 28,336 - PGA1_262p00230 0.50 -0.5 28,352 + PGA1_262p00230 0.51 +0.4 28,366 + PGA1_262p00230 0.52 +1.5 28,373 + PGA1_262p00230 0.53 -1.4 28,438 - PGA1_262p00230 0.57 +0.4
Or see this region's nucleotide sequence