Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35570

Experiment: m.b. nitrate 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrate 50 mM
3,728,211	-				-0.8
3,728,213	+				+0.8
3,728,213	+				-0.0
3,728,213	+				+0.5
3,728,213	+				-0.8
3,728,213	+				-0.4
3,728,214	+				-0.1
3,728,221	-				+0.7
3,728,221	-				+1.2
3,728,221	-				+0.8
3,728,333	+				-1.7
3,728,518	+		PGA1_c35560	0.30	-0.2
3,728,534	+		PGA1_c35560	0.32	+1.4
3,728,581	+		PGA1_c35560	0.38	+0.0
3,728,586	+		PGA1_c35560	0.38	-0.3
3,728,594	-		PGA1_c35560	0.39	-1.6
3,728,618	+		PGA1_c35560	0.42	+1.0
3,728,621	-		PGA1_c35560	0.43	+0.8
3,728,627	-		PGA1_c35560	0.43	-0.3
3,728,669	+		PGA1_c35560	0.48	+0.5
3,728,712	+		PGA1_c35560	0.53	+1.9
3,728,737	+		PGA1_c35560	0.56	+0.6
3,728,742	-		PGA1_c35560	0.57	+1.5
3,728,819	+		PGA1_c35560	0.66	+0.3
3,728,819	+		PGA1_c35560	0.66	+0.8
3,728,837	-		PGA1_c35560	0.68	-0.7
3,728,865	-		PGA1_c35560	0.72	+1.9
3,728,899	-		PGA1_c35560	0.76	+1.0
3,728,904	-		PGA1_c35560	0.76	+0.8
3,728,904	-		PGA1_c35560	0.76	+2.8
3,728,955	+		PGA1_c35560	0.82	+0.7
3,728,955	+		PGA1_c35560	0.82	-0.1
3,728,955	+		PGA1_c35560	0.82	+1.1
3,728,964	+		PGA1_c35560	0.84	-0.7
3,728,970	-		PGA1_c35560	0.84	-1.9
3,728,986	+		PGA1_c35560	0.86	-0.1
3,729,004	+		PGA1_c35560	0.88	-1.1
3,729,008	+		PGA1_c35560	0.89	+1.0
3,729,019	+				-0.2
3,729,209	+				+0.8
3,729,209	+				-1.1
3,729,209	+				-0.1
3,729,209	+				-0.0
3,729,209	+				+0.1
3,729,215	+				-0.2
3,729,216	+				+0.9
3,729,217	-				-0.1
3,729,217	-				-1.5
3,729,242	+				-0.0
3,729,250	-				-1.3
3,729,255	-				-1.1
3,729,255	-				+0.5
3,729,255	-				-2.7
3,729,262	+				-0.5
3,729,273	+				-1.7
3,729,275	+				-0.1
3,729,297	+				-0.2
3,729,329	+				+0.8
3,729,348	+		PGA1_c35570	0.11	-0.7
3,729,363	+		PGA1_c35570	0.12	-1.1
3,729,373	+		PGA1_c35570	0.13	-0.5
3,729,376	-		PGA1_c35570	0.13	-1.4
3,729,378	+		PGA1_c35570	0.13	-2.7
3,729,381	-		PGA1_c35570	0.13	-0.8
3,729,381	-		PGA1_c35570	0.13	-0.6
3,729,386	-		PGA1_c35570	0.14	-1.6
3,729,388	+		PGA1_c35570	0.14	-1.3
3,729,404	-		PGA1_c35570	0.15	-0.4
3,729,407	-		PGA1_c35570	0.15	-0.7
3,729,409	+		PGA1_c35570	0.15	+0.2
3,729,409	+		PGA1_c35570	0.15	-0.9
3,729,417	-		PGA1_c35570	0.16	-0.4
3,729,463	+		PGA1_c35570	0.20	-1.2
3,729,614	+		PGA1_c35570	0.31	-0.6
3,729,623	-		PGA1_c35570	0.32	-1.1
3,729,628	+		PGA1_c35570	0.32	+0.2
3,729,631	-		PGA1_c35570	0.32	-1.4
3,729,641	-		PGA1_c35570	0.33	-0.5
3,729,641	-		PGA1_c35570	0.33	-2.4
3,729,657	+		PGA1_c35570	0.34	+0.1
3,729,657	+		PGA1_c35570	0.34	+0.2
3,729,682	+		PGA1_c35570	0.36	-0.7
3,729,725	+		PGA1_c35570	0.39	-1.0
3,729,732	+		PGA1_c35570	0.40	-0.6
3,729,747	+		PGA1_c35570	0.41	+0.2
3,729,748	+		PGA1_c35570	0.41	-0.7
3,729,748	+		PGA1_c35570	0.41	-0.1
3,729,748	+		PGA1_c35570	0.41	-1.9
3,729,798	-		PGA1_c35570	0.45	-0.7
3,729,803	-		PGA1_c35570	0.45	-2.0
3,729,859	-		PGA1_c35570	0.50	+1.2
3,729,870	+		PGA1_c35570	0.50	-0.1
3,729,870	+		PGA1_c35570	0.50	-2.8
3,729,878	-		PGA1_c35570	0.51	+0.2
3,729,878	-		PGA1_c35570	0.51	-1.4
3,729,966	-		PGA1_c35570	0.58	-0.8
3,729,966	-		PGA1_c35570	0.58	+0.2
3,730,015	+		PGA1_c35570	0.61	-0.0
3,730,023	-		PGA1_c35570	0.62	-2.1
3,730,092	-		PGA1_c35570	0.67	-0.2
3,730,107	+		PGA1_c35570	0.68	-1.2
3,730,199	+		PGA1_c35570	0.75	-1.0
3,730,203	+		PGA1_c35570	0.76	-0.6
3,730,207	-		PGA1_c35570	0.76	-0.1
3,730,230	+		PGA1_c35570	0.78	-0.8
3,730,309	+		PGA1_c35570	0.84	-2.0
3,730,310	-		PGA1_c35570	0.84	-1.8
3,730,310	-		PGA1_c35570	0.84	-1.2
3,730,356	+		PGA1_c35570	0.87	-0.5
3,730,365	-		PGA1_c35570	0.88	-0.8
3,730,370	-		PGA1_c35570	0.88	-2.1
3,730,398	-				-0.9
3,730,446	+				+0.8
3,730,454	-				-1.0
3,730,488	+				+0.3
3,730,525	+				+0.0
3,730,570	-				-0.7
3,730,579	-				+0.6
3,730,579	-				-1.3
3,730,580	-				+0.6
3,730,580	-				-0.1
3,730,588	-				-0.1
3,730,605	-				-1.0
3,730,620	-				+1.5
3,730,663	-				-0.7
3,730,693	+				+0.4
3,730,702	-				-0.2
3,730,716	-				-0.5
3,730,716	-				-0.4
3,730,729	+		PGA1_c35580	0.11	-0.9
3,730,729	-		PGA1_c35580	0.11	-0.8
3,730,738	-		PGA1_c35580	0.11	-0.2
3,730,770	+		PGA1_c35580	0.13	-2.3
3,730,810	-		PGA1_c35580	0.16	+0.4
3,730,861	+		PGA1_c35580	0.20	-1.2
3,730,862	-		PGA1_c35580	0.20	-0.7
3,730,869	-		PGA1_c35580	0.20	-0.2
3,730,871	+		PGA1_c35580	0.20	-0.8
3,730,899	+		PGA1_c35580	0.22	+0.6
3,730,912	+		PGA1_c35580	0.23	-1.1
3,730,980	+		PGA1_c35580	0.28	+0.0
3,730,988	-		PGA1_c35580	0.29	+0.2
3,730,988	-		PGA1_c35580	0.29	-1.1
3,730,988	-		PGA1_c35580	0.29	-0.8
3,731,005	+		PGA1_c35580	0.30	-0.7
3,731,027	+		PGA1_c35580	0.31	-2.1
3,731,027	+		PGA1_c35580	0.31	-1.5
3,731,034	+		PGA1_c35580	0.32	-0.5
3,731,034	+		PGA1_c35580	0.32	+0.3
3,731,034	+		PGA1_c35580	0.32	-0.4
3,731,042	-		PGA1_c35580	0.32	-1.7
3,731,042	-		PGA1_c35580	0.32	-1.4
3,731,068	-		PGA1_c35580	0.34	-1.0
3,731,134	-		PGA1_c35580	0.39	+0.1
3,731,169	-		PGA1_c35580	0.41	-1.4
3,731,201	+		PGA1_c35580	0.43	-0.6
3,731,201	+		PGA1_c35580	0.43	+0.2
3,731,209	-		PGA1_c35580	0.44	-0.2
3,731,240	+		PGA1_c35580	0.46	+0.6
3,731,243	-		PGA1_c35580	0.46	+0.2
3,731,283	+		PGA1_c35580	0.49	+0.2
3,731,291	-		PGA1_c35580	0.49	-1.6
3,731,291	-		PGA1_c35580	0.49	-1.4
3,731,330	+		PGA1_c35580	0.52	-1.0
3,731,338	-		PGA1_c35580	0.53	+1.6
3,731,423	+		PGA1_c35580	0.59	+0.5
3,731,439	+		PGA1_c35580	0.60	-0.1
3,731,447	-		PGA1_c35580	0.60	-0.4
3,731,463	+		PGA1_c35580	0.61	-1.0
3,731,471	-		PGA1_c35580	0.62	-0.2