Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3269 and HP15_3270 are separated by 860 nucleotides HP15_3270 and HP15_3271 are separated by 113 nucleotides
HP15_3269: HP15_3269 - membrane protein containing ATP-binding region, ATPase-like domains, at 3,425,853 to 3,427,319
_3269
HP15_3270: HP15_3270 - OmpA/MotB domain protein, at 3,428,180 to 3,429,439
_3270
HP15_3271: HP15_3271 - aspartate aminotransferase, at 3,429,553 to 3,430,848
_3271
Position (kb)
3428
3429
3430 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3427.260 kb on + strand at 3427.393 kb on + strand at 3427.401 kb on - strand at 3427.480 kb on - strand at 3427.507 kb on - strand at 3427.521 kb on - strand at 3427.555 kb on + strand at 3427.582 kb on - strand at 3427.648 kb on + strand at 3427.769 kb on - strand at 3427.771 kb on + strand at 3427.874 kb on + strand at 3427.961 kb on + strand at 3427.969 kb on - strand at 3427.971 kb on + strand at 3427.979 kb on - strand at 3427.993 kb on - strand at 3428.177 kb on + strand at 3428.243 kb on - strand at 3428.305 kb on + strand at 3428.350 kb on - strand, within HP15_3270 at 3428.436 kb on - strand, within HP15_3270 at 3428.485 kb on + strand, within HP15_3270 at 3428.562 kb on - strand, within HP15_3270 at 3428.609 kb on - strand, within HP15_3270 at 3428.630 kb on - strand, within HP15_3270 at 3428.632 kb on + strand, within HP15_3270 at 3428.731 kb on + strand, within HP15_3270 at 3428.833 kb on - strand, within HP15_3270 at 3428.841 kb on - strand, within HP15_3270 at 3428.880 kb on - strand, within HP15_3270 at 3428.885 kb on - strand, within HP15_3270 at 3428.963 kb on - strand, within HP15_3270 at 3429.265 kb on - strand, within HP15_3270 at 3429.328 kb on - strand at 3429.367 kb on - strand at 3429.370 kb on + strand at 3429.500 kb on + strand at 3429.609 kb on + strand at 3429.648 kb on + strand at 3429.648 kb on + strand at 3429.736 kb on - strand, within HP15_3271 at 3429.775 kb on + strand, within HP15_3271 at 3429.874 kb on - strand, within HP15_3271 at 3430.104 kb on + strand, within HP15_3271 at 3430.170 kb on + strand, within HP15_3271 at 3430.187 kb on - strand, within HP15_3271 at 3430.191 kb on + strand, within HP15_3271 at 3430.261 kb on - strand, within HP15_3271 at 3430.370 kb on - strand, within HP15_3271
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 3,427,260 + -0.2 3,427,393 + +0.3 3,427,401 - +0.4 3,427,480 - +0.0 3,427,507 - +0.1 3,427,521 - +1.1 3,427,555 + +0.3 3,427,582 - -0.4 3,427,648 + +1.5 3,427,769 - -0.9 3,427,771 + -1.0 3,427,874 + +1.7 3,427,961 + -1.2 3,427,969 - +0.0 3,427,971 + -0.8 3,427,979 - -0.8 3,427,993 - -0.0 3,428,177 + -0.2 3,428,243 - +1.6 3,428,305 + -0.4 3,428,350 - HP15_3270 0.13 -1.3 3,428,436 - HP15_3270 0.20 +0.4 3,428,485 + HP15_3270 0.24 +1.0 3,428,562 - HP15_3270 0.30 -0.4 3,428,609 - HP15_3270 0.34 -0.2 3,428,630 - HP15_3270 0.36 +1.8 3,428,632 + HP15_3270 0.36 -0.4 3,428,731 + HP15_3270 0.44 -0.3 3,428,833 - HP15_3270 0.52 +2.0 3,428,841 - HP15_3270 0.52 +2.7 3,428,880 - HP15_3270 0.56 +2.1 3,428,885 - HP15_3270 0.56 +1.4 3,428,963 - HP15_3270 0.62 -0.5 3,429,265 - HP15_3270 0.86 +1.6 3,429,328 - +1.8 3,429,367 - -0.9 3,429,370 + +2.0 3,429,500 + -0.8 3,429,609 + -0.1 3,429,648 + -0.3 3,429,648 + -1.3 3,429,736 - HP15_3271 0.14 -0.1 3,429,775 + HP15_3271 0.17 -0.6 3,429,874 - HP15_3271 0.25 -1.8 3,430,104 + HP15_3271 0.43 +2.5 3,430,170 + HP15_3271 0.48 -0.6 3,430,187 - HP15_3271 0.49 +1.6 3,430,191 + HP15_3271 0.49 +2.3 3,430,261 - HP15_3271 0.55 -0.7 3,430,370 - HP15_3271 0.63 -1.1
Or see this region's nucleotide sequence