Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_278 and HP15_279 are separated by 17 nucleotides HP15_279 and HP15_280 are separated by 17 nucleotides HP15_280 and HP15_281 are separated by 89 nucleotides HP15_281 and HP15_282 are separated by 6 nucleotides
HP15_278: HP15_278 - tRNA (guanine-N(7)-)-methyltransferase, at 270,022 to 270,753
_278
HP15_279: HP15_279 - conserved hypothetical protein, membrane, at 270,771 to 271,286
_279
HP15_280: HP15_280 - putative oxygen-independent coproporphyrinogen III oxidase, at 271,304 to 272,386
_280
HP15_281: HP15_281 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 272,476 to 273,075
_281
HP15_282: HP15_282 - conserved hypothetical protein, secreted, at 273,082 to 273,537
_282
Position (kb) 271
272
273 Strain fitness (log2 ratio) -1
0
1
2 at 270.324 kb on + strand, within HP15_278 at 270.342 kb on + strand, within HP15_278 at 270.397 kb on - strand, within HP15_278 at 270.458 kb on + strand, within HP15_278 at 270.520 kb on - strand, within HP15_278 at 270.536 kb on + strand, within HP15_278 at 270.537 kb on + strand, within HP15_278 at 270.770 kb on - strand at 270.775 kb on - strand at 270.855 kb on - strand, within HP15_279 at 270.866 kb on + strand, within HP15_279 at 270.876 kb on - strand, within HP15_279 at 270.878 kb on + strand, within HP15_279 at 270.926 kb on + strand, within HP15_279 at 270.934 kb on + strand, within HP15_279 at 270.965 kb on + strand, within HP15_279 at 271.150 kb on + strand, within HP15_279 at 271.184 kb on - strand, within HP15_279 at 271.184 kb on - strand, within HP15_279 at 271.221 kb on - strand, within HP15_279 at 271.435 kb on - strand, within HP15_280 at 271.536 kb on - strand, within HP15_280 at 271.536 kb on - strand, within HP15_280 at 271.830 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on + strand, within HP15_280 at 271.880 kb on - strand, within HP15_280 at 271.880 kb on - strand, within HP15_280 at 271.898 kb on - strand, within HP15_280 at 272.062 kb on - strand, within HP15_280 at 272.168 kb on + strand, within HP15_280 at 272.233 kb on - strand, within HP15_280 at 272.395 kb on - strand at 272.396 kb on - strand at 272.479 kb on + strand at 272.486 kb on + strand at 272.636 kb on - strand, within HP15_281 at 272.636 kb on - strand, within HP15_281 at 272.654 kb on - strand, within HP15_281 at 272.716 kb on + strand, within HP15_281 at 272.790 kb on - strand, within HP15_281 at 273.079 kb on + strand at 273.087 kb on - strand at 273.104 kb on - strand at 273.105 kb on - strand at 273.134 kb on - strand, within HP15_282 at 273.282 kb on - strand, within HP15_282 at 273.350 kb on + strand, within HP15_282 at 273.354 kb on - strand, within HP15_282 at 273.379 kb on - strand, within HP15_282
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 270,324 + HP15_278 0.41 +1.9 270,342 + HP15_278 0.44 -0.4 270,397 - HP15_278 0.51 -0.1 270,458 + HP15_278 0.60 -0.7 270,520 - HP15_278 0.68 +2.4 270,536 + HP15_278 0.70 +1.5 270,537 + HP15_278 0.70 -0.8 270,770 - +1.7 270,775 - -0.6 270,855 - HP15_279 0.16 +1.9 270,866 + HP15_279 0.18 -0.2 270,876 - HP15_279 0.20 +0.2 270,878 + HP15_279 0.21 -0.0 270,926 + HP15_279 0.30 +1.5 270,934 + HP15_279 0.32 +2.2 270,965 + HP15_279 0.38 -0.7 271,150 + HP15_279 0.73 +1.8 271,184 - HP15_279 0.80 +0.4 271,184 - HP15_279 0.80 -0.0 271,221 - HP15_279 0.87 +0.8 271,435 - HP15_280 0.12 +2.0 271,536 - HP15_280 0.21 +0.7 271,536 - HP15_280 0.21 +1.6 271,830 + HP15_280 0.49 +0.0 271,880 + HP15_280 0.53 +0.6 271,880 + HP15_280 0.53 +1.9 271,880 + HP15_280 0.53 +1.6 271,880 + HP15_280 0.53 -0.9 271,880 - HP15_280 0.53 +1.6 271,880 - HP15_280 0.53 -0.3 271,898 - HP15_280 0.55 -1.3 272,062 - HP15_280 0.70 -0.1 272,168 + HP15_280 0.80 +1.7 272,233 - HP15_280 0.86 +1.6 272,395 - +1.8 272,396 - +0.3 272,479 + +1.3 272,486 + -0.4 272,636 - HP15_281 0.27 -0.4 272,636 - HP15_281 0.27 +0.4 272,654 - HP15_281 0.30 -0.6 272,716 + HP15_281 0.40 +2.0 272,790 - HP15_281 0.52 -1.1 273,079 + +0.5 273,087 - +2.0 273,104 - -0.4 273,105 - +1.9 273,134 - HP15_282 0.11 +1.5 273,282 - HP15_282 0.44 -0.3 273,350 + HP15_282 0.59 +1.9 273,354 - HP15_282 0.60 +0.7 273,379 - HP15_282 0.65 -1.1
Or see this region's nucleotide sequence