Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2274 and HP15_2275 overlap by 7 nucleotides HP15_2275 and HP15_2276 are separated by 2 nucleotides HP15_2276 and HP15_2277 are separated by 3 nucleotides
HP15_2274: HP15_2274 - TPR repeat-containing protein, at 2,397,821 to 2,399,635
_2274
HP15_2275: HP15_2275 - conserved hypothetical protein, secreted, at 2,399,629 to 2,400,813
_2275
HP15_2276: HP15_2276 - conserved hypothetical protein, at 2,400,816 to 2,401,370
_2276
HP15_2277: HP15_2277 - TPR repeat protein, at 2,401,374 to 2,402,516
_2277
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2398.767 kb on - strand, within HP15_2274 at 2398.772 kb on - strand, within HP15_2274 at 2398.968 kb on + strand, within HP15_2274 at 2398.973 kb on + strand, within HP15_2274 at 2398.976 kb on - strand, within HP15_2274 at 2398.981 kb on - strand, within HP15_2274 at 2398.986 kb on - strand, within HP15_2274 at 2399.060 kb on + strand, within HP15_2274 at 2399.186 kb on + strand, within HP15_2274 at 2399.250 kb on + strand, within HP15_2274 at 2399.325 kb on + strand, within HP15_2274 at 2399.401 kb on - strand, within HP15_2274 at 2399.628 kb on - strand at 2399.773 kb on + strand, within HP15_2275 at 2399.861 kb on - strand, within HP15_2275 at 2399.968 kb on - strand, within HP15_2275 at 2400.010 kb on - strand, within HP15_2275 at 2400.010 kb on - strand, within HP15_2275 at 2400.022 kb on - strand, within HP15_2275 at 2400.285 kb on - strand, within HP15_2275 at 2400.332 kb on + strand, within HP15_2275 at 2400.374 kb on - strand, within HP15_2275 at 2400.374 kb on - strand, within HP15_2275 at 2400.453 kb on - strand, within HP15_2275 at 2400.498 kb on + strand, within HP15_2275 at 2400.597 kb on - strand, within HP15_2275 at 2400.597 kb on - strand, within HP15_2275 at 2400.610 kb on + strand, within HP15_2275 at 2400.629 kb on - strand, within HP15_2275 at 2400.830 kb on - strand at 2400.916 kb on + strand, within HP15_2276 at 2401.038 kb on - strand, within HP15_2276 at 2401.108 kb on - strand, within HP15_2276 at 2401.116 kb on - strand, within HP15_2276 at 2401.157 kb on + strand, within HP15_2276 at 2401.187 kb on - strand, within HP15_2276 at 2401.717 kb on - strand, within HP15_2277 at 2401.785 kb on + strand, within HP15_2277 at 2401.793 kb on - strand, within HP15_2277 at 2401.793 kb on - strand, within HP15_2277
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 2,398,767 - HP15_2274 0.52 -0.3 2,398,772 - HP15_2274 0.52 -1.7 2,398,968 + HP15_2274 0.63 -0.8 2,398,973 + HP15_2274 0.63 +0.6 2,398,976 - HP15_2274 0.64 +1.4 2,398,981 - HP15_2274 0.64 -0.6 2,398,986 - HP15_2274 0.64 -1.7 2,399,060 + HP15_2274 0.68 -0.2 2,399,186 + HP15_2274 0.75 -1.5 2,399,250 + HP15_2274 0.79 -0.3 2,399,325 + HP15_2274 0.83 -0.1 2,399,401 - HP15_2274 0.87 +2.6 2,399,628 - +0.3 2,399,773 + HP15_2275 0.12 -0.1 2,399,861 - HP15_2275 0.20 +2.2 2,399,968 - HP15_2275 0.29 -0.3 2,400,010 - HP15_2275 0.32 -0.4 2,400,010 - HP15_2275 0.32 -0.8 2,400,022 - HP15_2275 0.33 +1.5 2,400,285 - HP15_2275 0.55 -0.7 2,400,332 + HP15_2275 0.59 -0.8 2,400,374 - HP15_2275 0.63 +0.2 2,400,374 - HP15_2275 0.63 -0.5 2,400,453 - HP15_2275 0.70 -0.5 2,400,498 + HP15_2275 0.73 -0.5 2,400,597 - HP15_2275 0.82 +1.0 2,400,597 - HP15_2275 0.82 -1.9 2,400,610 + HP15_2275 0.83 -0.5 2,400,629 - HP15_2275 0.84 -0.8 2,400,830 - -0.7 2,400,916 + HP15_2276 0.18 -0.2 2,401,038 - HP15_2276 0.40 +0.8 2,401,108 - HP15_2276 0.53 -1.6 2,401,116 - HP15_2276 0.54 -0.6 2,401,157 + HP15_2276 0.61 -1.0 2,401,187 - HP15_2276 0.67 +0.0 2,401,717 - HP15_2277 0.30 -0.4 2,401,785 + HP15_2277 0.36 -0.6 2,401,793 - HP15_2277 0.37 -0.8 2,401,793 - HP15_2277 0.37 -1.2
Or see this region's nucleotide sequence