Strain Fitness in Marinobacter adhaerens HP15 around HP15_2275

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2274 and HP15_2275 overlap by 7 nucleotidesHP15_2275 and HP15_2276 are separated by 2 nucleotidesHP15_2276 and HP15_2277 are separated by 3 nucleotides HP15_2274: HP15_2274 - TPR repeat-containing protein, at 2,397,821 to 2,399,635 _2274 HP15_2275: HP15_2275 - conserved hypothetical protein, secreted, at 2,399,629 to 2,400,813 _2275 HP15_2276: HP15_2276 - conserved hypothetical protein, at 2,400,816 to 2,401,370 _2276 HP15_2277: HP15_2277 - TPR repeat protein, at 2,401,374 to 2,402,516 _2277 Position (kb) 2399 2400 2401Strain fitness (log2 ratio) -2 -1 0 1 2at 2398.767 kb on - strand, within HP15_2274at 2398.772 kb on - strand, within HP15_2274at 2398.968 kb on + strand, within HP15_2274at 2398.973 kb on + strand, within HP15_2274at 2398.976 kb on - strand, within HP15_2274at 2398.981 kb on - strand, within HP15_2274at 2398.986 kb on - strand, within HP15_2274at 2399.060 kb on + strand, within HP15_2274at 2399.186 kb on + strand, within HP15_2274at 2399.250 kb on + strand, within HP15_2274at 2399.325 kb on + strand, within HP15_2274at 2399.401 kb on - strand, within HP15_2274at 2399.628 kb on - strandat 2399.773 kb on + strand, within HP15_2275at 2399.861 kb on - strand, within HP15_2275at 2399.968 kb on - strand, within HP15_2275at 2400.010 kb on - strand, within HP15_2275at 2400.010 kb on - strand, within HP15_2275at 2400.022 kb on - strand, within HP15_2275at 2400.285 kb on - strand, within HP15_2275at 2400.332 kb on + strand, within HP15_2275at 2400.374 kb on - strand, within HP15_2275at 2400.374 kb on - strand, within HP15_2275at 2400.453 kb on - strand, within HP15_2275at 2400.498 kb on + strand, within HP15_2275at 2400.597 kb on - strand, within HP15_2275at 2400.597 kb on - strand, within HP15_2275at 2400.610 kb on + strand, within HP15_2275at 2400.629 kb on - strand, within HP15_2275at 2400.830 kb on - strandat 2400.916 kb on + strand, within HP15_2276at 2401.038 kb on - strand, within HP15_2276at 2401.108 kb on - strand, within HP15_2276at 2401.116 kb on - strand, within HP15_2276at 2401.157 kb on + strand, within HP15_2276at 2401.187 kb on - strand, within HP15_2276at 2401.717 kb on - strand, within HP15_2277at 2401.785 kb on + strand, within HP15_2277at 2401.793 kb on - strand, within HP15_2277at 2401.793 kb on - strand, within HP15_2277

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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2,398,767 - HP15_2274 0.52 -0.3
2,398,772 - HP15_2274 0.52 -1.7
2,398,968 + HP15_2274 0.63 -0.8
2,398,973 + HP15_2274 0.63 +0.6
2,398,976 - HP15_2274 0.64 +1.4
2,398,981 - HP15_2274 0.64 -0.6
2,398,986 - HP15_2274 0.64 -1.7
2,399,060 + HP15_2274 0.68 -0.2
2,399,186 + HP15_2274 0.75 -1.5
2,399,250 + HP15_2274 0.79 -0.3
2,399,325 + HP15_2274 0.83 -0.1
2,399,401 - HP15_2274 0.87 +2.6
2,399,628 - +0.3
2,399,773 + HP15_2275 0.12 -0.1
2,399,861 - HP15_2275 0.20 +2.2
2,399,968 - HP15_2275 0.29 -0.3
2,400,010 - HP15_2275 0.32 -0.4
2,400,010 - HP15_2275 0.32 -0.8
2,400,022 - HP15_2275 0.33 +1.5
2,400,285 - HP15_2275 0.55 -0.7
2,400,332 + HP15_2275 0.59 -0.8
2,400,374 - HP15_2275 0.63 +0.2
2,400,374 - HP15_2275 0.63 -0.5
2,400,453 - HP15_2275 0.70 -0.5
2,400,498 + HP15_2275 0.73 -0.5
2,400,597 - HP15_2275 0.82 +1.0
2,400,597 - HP15_2275 0.82 -1.9
2,400,610 + HP15_2275 0.83 -0.5
2,400,629 - HP15_2275 0.84 -0.8
2,400,830 - -0.7
2,400,916 + HP15_2276 0.18 -0.2
2,401,038 - HP15_2276 0.40 +0.8
2,401,108 - HP15_2276 0.53 -1.6
2,401,116 - HP15_2276 0.54 -0.6
2,401,157 + HP15_2276 0.61 -1.0
2,401,187 - HP15_2276 0.67 +0.0
2,401,717 - HP15_2277 0.30 -0.4
2,401,785 + HP15_2277 0.36 -0.6
2,401,793 - HP15_2277 0.37 -0.8
2,401,793 - HP15_2277 0.37 -1.2

Or see this region's nucleotide sequence