Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2127 and HP15_2128 are separated by 32 nucleotides HP15_2128 and HP15_2129 are separated by 21 nucleotides HP15_2129 and HP15_2130 are separated by 8 nucleotides
HP15_2127: HP15_2127 - efflux transporter, RND family, MFP subunit, at 2,227,632 to 2,228,837
_2127
HP15_2128: HP15_2128 - ABC transporter, permease protein, at 2,228,870 to 2,231,251
_2128
HP15_2129: HP15_2129 - ABC transporter ATP-binding protein-like protein, at 2,231,273 to 2,232,004
_2129
HP15_2130: HP15_2130 - transcriptional regulator, TraR/DksA family, at 2,232,013 to 2,232,333
_2130
Position (kb)
2228
2229
2230
2231
2232 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2227.908 kb on + strand, within HP15_2127 at 2227.962 kb on + strand, within HP15_2127 at 2228.023 kb on - strand, within HP15_2127 at 2228.162 kb on - strand, within HP15_2127 at 2228.204 kb on - strand, within HP15_2127 at 2228.211 kb on + strand, within HP15_2127 at 2228.269 kb on - strand, within HP15_2127 at 2228.295 kb on + strand, within HP15_2127 at 2228.476 kb on + strand, within HP15_2127 at 2228.486 kb on + strand, within HP15_2127 at 2228.489 kb on - strand, within HP15_2127 at 2228.617 kb on + strand, within HP15_2127 at 2228.747 kb on - strand at 2228.797 kb on + strand at 2228.840 kb on + strand at 2228.840 kb on + strand at 2229.014 kb on - strand at 2229.036 kb on + strand at 2229.047 kb on + strand at 2229.162 kb on - strand, within HP15_2128 at 2229.273 kb on + strand, within HP15_2128 at 2229.364 kb on + strand, within HP15_2128 at 2229.382 kb on + strand, within HP15_2128 at 2229.382 kb on + strand, within HP15_2128 at 2229.390 kb on - strand, within HP15_2128 at 2229.400 kb on - strand, within HP15_2128 at 2229.547 kb on - strand, within HP15_2128 at 2229.603 kb on + strand, within HP15_2128 at 2229.611 kb on - strand, within HP15_2128 at 2229.623 kb on + strand, within HP15_2128 at 2229.786 kb on - strand, within HP15_2128 at 2229.905 kb on + strand, within HP15_2128 at 2229.905 kb on + strand, within HP15_2128 at 2229.907 kb on - strand, within HP15_2128 at 2229.944 kb on - strand, within HP15_2128 at 2229.975 kb on + strand, within HP15_2128 at 2230.045 kb on + strand, within HP15_2128 at 2230.052 kb on + strand, within HP15_2128 at 2230.104 kb on + strand, within HP15_2128 at 2230.234 kb on + strand, within HP15_2128 at 2230.329 kb on + strand, within HP15_2128 at 2230.329 kb on + strand, within HP15_2128 at 2230.471 kb on - strand, within HP15_2128 at 2230.520 kb on - strand, within HP15_2128 at 2230.572 kb on + strand, within HP15_2128 at 2230.653 kb on + strand, within HP15_2128 at 2230.843 kb on - strand, within HP15_2128 at 2230.888 kb on - strand, within HP15_2128 at 2230.889 kb on + strand, within HP15_2128 at 2231.005 kb on + strand, within HP15_2128 at 2231.107 kb on + strand at 2231.156 kb on - strand at 2231.171 kb on + strand at 2231.262 kb on + strand at 2231.270 kb on - strand at 2231.292 kb on - strand at 2231.372 kb on + strand, within HP15_2129 at 2231.406 kb on - strand, within HP15_2129 at 2231.424 kb on + strand, within HP15_2129 at 2231.429 kb on + strand, within HP15_2129 at 2231.432 kb on - strand, within HP15_2129 at 2231.502 kb on - strand, within HP15_2129 at 2231.749 kb on + strand, within HP15_2129 at 2231.830 kb on - strand, within HP15_2129 at 2231.915 kb on + strand, within HP15_2129 at 2231.963 kb on + strand at 2232.016 kb on + strand at 2232.016 kb on + strand at 2232.018 kb on + strand at 2232.028 kb on - strand at 2232.080 kb on - strand, within HP15_2130 at 2232.107 kb on + strand, within HP15_2130
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 2,227,908 + HP15_2127 0.23 -0.4 2,227,962 + HP15_2127 0.27 +0.3 2,228,023 - HP15_2127 0.32 -1.1 2,228,162 - HP15_2127 0.44 +0.4 2,228,204 - HP15_2127 0.47 +0.3 2,228,211 + HP15_2127 0.48 -0.4 2,228,269 - HP15_2127 0.53 +1.6 2,228,295 + HP15_2127 0.55 +1.8 2,228,476 + HP15_2127 0.70 +0.7 2,228,486 + HP15_2127 0.71 +0.8 2,228,489 - HP15_2127 0.71 -0.2 2,228,617 + HP15_2127 0.82 -0.5 2,228,747 - +0.8 2,228,797 + +1.7 2,228,840 + +0.2 2,228,840 + +0.5 2,229,014 - +0.4 2,229,036 + +0.3 2,229,047 + -0.0 2,229,162 - HP15_2128 0.12 -3.4 2,229,273 + HP15_2128 0.17 -0.2 2,229,364 + HP15_2128 0.21 +2.1 2,229,382 + HP15_2128 0.21 +2.0 2,229,382 + HP15_2128 0.21 -0.8 2,229,390 - HP15_2128 0.22 -0.7 2,229,400 - HP15_2128 0.22 -0.6 2,229,547 - HP15_2128 0.28 -0.0 2,229,603 + HP15_2128 0.31 +1.8 2,229,611 - HP15_2128 0.31 +2.3 2,229,623 + HP15_2128 0.32 +2.3 2,229,786 - HP15_2128 0.38 +0.9 2,229,905 + HP15_2128 0.43 +1.9 2,229,905 + HP15_2128 0.43 -0.3 2,229,907 - HP15_2128 0.44 -0.1 2,229,944 - HP15_2128 0.45 -0.4 2,229,975 + HP15_2128 0.46 -1.2 2,230,045 + HP15_2128 0.49 +2.1 2,230,052 + HP15_2128 0.50 +0.0 2,230,104 + HP15_2128 0.52 +0.5 2,230,234 + HP15_2128 0.57 -0.7 2,230,329 + HP15_2128 0.61 +1.4 2,230,329 + HP15_2128 0.61 -0.4 2,230,471 - HP15_2128 0.67 -0.4 2,230,520 - HP15_2128 0.69 +1.7 2,230,572 + HP15_2128 0.71 -0.4 2,230,653 + HP15_2128 0.75 +1.1 2,230,843 - HP15_2128 0.83 +1.4 2,230,888 - HP15_2128 0.85 +1.6 2,230,889 + HP15_2128 0.85 +2.0 2,231,005 + HP15_2128 0.90 +2.5 2,231,107 + -1.4 2,231,156 - +1.1 2,231,171 + +0.8 2,231,262 + +1.7 2,231,270 - -0.5 2,231,292 - +2.4 2,231,372 + HP15_2129 0.14 +0.1 2,231,406 - HP15_2129 0.18 +0.6 2,231,424 + HP15_2129 0.21 +2.0 2,231,429 + HP15_2129 0.21 +0.1 2,231,432 - HP15_2129 0.22 +1.9 2,231,502 - HP15_2129 0.31 -0.6 2,231,749 + HP15_2129 0.65 -2.1 2,231,830 - HP15_2129 0.76 -0.4 2,231,915 + HP15_2129 0.88 -0.3 2,231,963 + +2.0 2,232,016 + -1.6 2,232,016 + -0.5 2,232,018 + +1.6 2,232,028 - -0.2 2,232,080 - HP15_2130 0.21 +1.9 2,232,107 + HP15_2130 0.29 +1.3
Or see this region's nucleotide sequence