Strain Fitness in Marinobacter adhaerens HP15 around HP15_2128

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2127 and HP15_2128 are separated by 32 nucleotidesHP15_2128 and HP15_2129 are separated by 21 nucleotidesHP15_2129 and HP15_2130 are separated by 8 nucleotides HP15_2127: HP15_2127 - efflux transporter, RND family, MFP subunit, at 2,227,632 to 2,228,837 _2127 HP15_2128: HP15_2128 - ABC transporter, permease protein, at 2,228,870 to 2,231,251 _2128 HP15_2129: HP15_2129 - ABC transporter ATP-binding protein-like protein, at 2,231,273 to 2,232,004 _2129 HP15_2130: HP15_2130 - transcriptional regulator, TraR/DksA family, at 2,232,013 to 2,232,333 _2130 Position (kb) 2228 2229 2230 2231 2232Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2227.908 kb on + strand, within HP15_2127at 2227.962 kb on + strand, within HP15_2127at 2228.023 kb on - strand, within HP15_2127at 2228.162 kb on - strand, within HP15_2127at 2228.204 kb on - strand, within HP15_2127at 2228.211 kb on + strand, within HP15_2127at 2228.269 kb on - strand, within HP15_2127at 2228.295 kb on + strand, within HP15_2127at 2228.476 kb on + strand, within HP15_2127at 2228.486 kb on + strand, within HP15_2127at 2228.489 kb on - strand, within HP15_2127at 2228.617 kb on + strand, within HP15_2127at 2228.747 kb on - strandat 2228.797 kb on + strandat 2228.840 kb on + strandat 2228.840 kb on + strandat 2229.014 kb on - strandat 2229.036 kb on + strandat 2229.047 kb on + strandat 2229.162 kb on - strand, within HP15_2128at 2229.273 kb on + strand, within HP15_2128at 2229.364 kb on + strand, within HP15_2128at 2229.382 kb on + strand, within HP15_2128at 2229.382 kb on + strand, within HP15_2128at 2229.390 kb on - strand, within HP15_2128at 2229.400 kb on - strand, within HP15_2128at 2229.547 kb on - strand, within HP15_2128at 2229.603 kb on + strand, within HP15_2128at 2229.611 kb on - strand, within HP15_2128at 2229.623 kb on + strand, within HP15_2128at 2229.786 kb on - strand, within HP15_2128at 2229.905 kb on + strand, within HP15_2128at 2229.905 kb on + strand, within HP15_2128at 2229.907 kb on - strand, within HP15_2128at 2229.944 kb on - strand, within HP15_2128at 2229.975 kb on + strand, within HP15_2128at 2230.045 kb on + strand, within HP15_2128at 2230.052 kb on + strand, within HP15_2128at 2230.104 kb on + strand, within HP15_2128at 2230.234 kb on + strand, within HP15_2128at 2230.329 kb on + strand, within HP15_2128at 2230.329 kb on + strand, within HP15_2128at 2230.471 kb on - strand, within HP15_2128at 2230.520 kb on - strand, within HP15_2128at 2230.572 kb on + strand, within HP15_2128at 2230.653 kb on + strand, within HP15_2128at 2230.843 kb on - strand, within HP15_2128at 2230.888 kb on - strand, within HP15_2128at 2230.889 kb on + strand, within HP15_2128at 2231.005 kb on + strand, within HP15_2128at 2231.107 kb on + strandat 2231.156 kb on - strandat 2231.171 kb on + strandat 2231.262 kb on + strandat 2231.270 kb on - strandat 2231.292 kb on - strandat 2231.372 kb on + strand, within HP15_2129at 2231.406 kb on - strand, within HP15_2129at 2231.424 kb on + strand, within HP15_2129at 2231.429 kb on + strand, within HP15_2129at 2231.432 kb on - strand, within HP15_2129at 2231.502 kb on - strand, within HP15_2129at 2231.749 kb on + strand, within HP15_2129at 2231.830 kb on - strand, within HP15_2129at 2231.915 kb on + strand, within HP15_2129at 2231.963 kb on + strandat 2232.016 kb on + strandat 2232.016 kb on + strandat 2232.018 kb on + strandat 2232.028 kb on - strandat 2232.080 kb on - strand, within HP15_2130at 2232.107 kb on + strand, within HP15_2130

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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2,227,908 + HP15_2127 0.23 -0.4
2,227,962 + HP15_2127 0.27 +0.3
2,228,023 - HP15_2127 0.32 -1.1
2,228,162 - HP15_2127 0.44 +0.4
2,228,204 - HP15_2127 0.47 +0.3
2,228,211 + HP15_2127 0.48 -0.4
2,228,269 - HP15_2127 0.53 +1.6
2,228,295 + HP15_2127 0.55 +1.8
2,228,476 + HP15_2127 0.70 +0.7
2,228,486 + HP15_2127 0.71 +0.8
2,228,489 - HP15_2127 0.71 -0.2
2,228,617 + HP15_2127 0.82 -0.5
2,228,747 - +0.8
2,228,797 + +1.7
2,228,840 + +0.2
2,228,840 + +0.5
2,229,014 - +0.4
2,229,036 + +0.3
2,229,047 + -0.0
2,229,162 - HP15_2128 0.12 -3.4
2,229,273 + HP15_2128 0.17 -0.2
2,229,364 + HP15_2128 0.21 +2.1
2,229,382 + HP15_2128 0.21 +2.0
2,229,382 + HP15_2128 0.21 -0.8
2,229,390 - HP15_2128 0.22 -0.7
2,229,400 - HP15_2128 0.22 -0.6
2,229,547 - HP15_2128 0.28 -0.0
2,229,603 + HP15_2128 0.31 +1.8
2,229,611 - HP15_2128 0.31 +2.3
2,229,623 + HP15_2128 0.32 +2.3
2,229,786 - HP15_2128 0.38 +0.9
2,229,905 + HP15_2128 0.43 +1.9
2,229,905 + HP15_2128 0.43 -0.3
2,229,907 - HP15_2128 0.44 -0.1
2,229,944 - HP15_2128 0.45 -0.4
2,229,975 + HP15_2128 0.46 -1.2
2,230,045 + HP15_2128 0.49 +2.1
2,230,052 + HP15_2128 0.50 +0.0
2,230,104 + HP15_2128 0.52 +0.5
2,230,234 + HP15_2128 0.57 -0.7
2,230,329 + HP15_2128 0.61 +1.4
2,230,329 + HP15_2128 0.61 -0.4
2,230,471 - HP15_2128 0.67 -0.4
2,230,520 - HP15_2128 0.69 +1.7
2,230,572 + HP15_2128 0.71 -0.4
2,230,653 + HP15_2128 0.75 +1.1
2,230,843 - HP15_2128 0.83 +1.4
2,230,888 - HP15_2128 0.85 +1.6
2,230,889 + HP15_2128 0.85 +2.0
2,231,005 + HP15_2128 0.90 +2.5
2,231,107 + -1.4
2,231,156 - +1.1
2,231,171 + +0.8
2,231,262 + +1.7
2,231,270 - -0.5
2,231,292 - +2.4
2,231,372 + HP15_2129 0.14 +0.1
2,231,406 - HP15_2129 0.18 +0.6
2,231,424 + HP15_2129 0.21 +2.0
2,231,429 + HP15_2129 0.21 +0.1
2,231,432 - HP15_2129 0.22 +1.9
2,231,502 - HP15_2129 0.31 -0.6
2,231,749 + HP15_2129 0.65 -2.1
2,231,830 - HP15_2129 0.76 -0.4
2,231,915 + HP15_2129 0.88 -0.3
2,231,963 + +2.0
2,232,016 + -1.6
2,232,016 + -0.5
2,232,018 + +1.6
2,232,028 - -0.2
2,232,080 - HP15_2130 0.21 +1.9
2,232,107 + HP15_2130 0.29 +1.3

Or see this region's nucleotide sequence