Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_206 and HP15_207 are separated by 76 nucleotides HP15_207 and HP15_208 are separated by 89 nucleotides HP15_208 and HP15_209 are separated by 9 nucleotides HP15_209 and HP15_210 are separated by 143 nucleotides
HP15_206: HP15_206 - Xaa-Pro dipeptidase, at 193,515 to 194,837
_206
HP15_207: HP15_207 - BFD-like (2Fe-2S)-binding region, at 194,914 to 195,120
_207
HP15_208: HP15_208 - bacterioferritin, at 195,210 to 195,686
_208
HP15_209: HP15_209 - phosphomannomutase, at 195,696 to 197,054
_209
HP15_210: HP15_210 - phospholipase A(1), at 197,198 to 198,325
_210
Position (kb) 195
196
197
198 Strain fitness (log2 ratio) -1
0
1
2 at 194.792 kb on + strand at 194.823 kb on - strand at 194.922 kb on - strand at 194.936 kb on + strand, within HP15_207 at 195.163 kb on + strand at 195.177 kb on - strand at 195.249 kb on + strand at 195.525 kb on + strand, within HP15_208 at 195.556 kb on + strand, within HP15_208 at 195.702 kb on - strand at 195.762 kb on - strand at 195.829 kb on - strand at 195.868 kb on + strand, within HP15_209 at 195.922 kb on - strand, within HP15_209 at 195.927 kb on - strand, within HP15_209 at 195.929 kb on + strand, within HP15_209 at 195.967 kb on + strand, within HP15_209 at 196.007 kb on - strand, within HP15_209 at 196.024 kb on + strand, within HP15_209 at 196.080 kb on - strand, within HP15_209 at 196.127 kb on + strand, within HP15_209 at 196.482 kb on + strand, within HP15_209 at 196.516 kb on - strand, within HP15_209 at 196.643 kb on - strand, within HP15_209 at 196.743 kb on + strand, within HP15_209 at 196.751 kb on - strand, within HP15_209 at 196.826 kb on + strand, within HP15_209 at 197.002 kb on - strand at 197.121 kb on + strand at 197.155 kb on + strand at 197.172 kb on + strand at 197.215 kb on + strand at 197.215 kb on + strand at 197.223 kb on - strand at 197.234 kb on - strand at 197.297 kb on + strand at 197.307 kb on - strand at 197.411 kb on + strand, within HP15_210 at 197.445 kb on - strand, within HP15_210 at 197.594 kb on - strand, within HP15_210 at 197.594 kb on - strand, within HP15_210 at 197.710 kb on + strand, within HP15_210 at 197.717 kb on + strand, within HP15_210 at 197.725 kb on - strand, within HP15_210 at 197.743 kb on + strand, within HP15_210 at 197.751 kb on - strand, within HP15_210 at 197.800 kb on + strand, within HP15_210 at 197.925 kb on - strand, within HP15_210 at 197.925 kb on - strand, within HP15_210 at 198.011 kb on - strand, within HP15_210 at 198.029 kb on + strand, within HP15_210
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 194,792 + -0.9 194,823 - +1.9 194,922 - -1.0 194,936 + HP15_207 0.11 +1.9 195,163 + -1.5 195,177 - -1.3 195,249 + -0.8 195,525 + HP15_208 0.66 -0.1 195,556 + HP15_208 0.73 -0.6 195,702 - +1.0 195,762 - +0.0 195,829 - +0.4 195,868 + HP15_209 0.13 +0.3 195,922 - HP15_209 0.17 -1.1 195,927 - HP15_209 0.17 -0.2 195,929 + HP15_209 0.17 +0.2 195,967 + HP15_209 0.20 +0.4 196,007 - HP15_209 0.23 -0.6 196,024 + HP15_209 0.24 +0.0 196,080 - HP15_209 0.28 -0.2 196,127 + HP15_209 0.32 -0.7 196,482 + HP15_209 0.58 -0.4 196,516 - HP15_209 0.60 -0.6 196,643 - HP15_209 0.70 +0.7 196,743 + HP15_209 0.77 +2.0 196,751 - HP15_209 0.78 -0.3 196,826 + HP15_209 0.83 +0.7 197,002 - -0.6 197,121 + +1.4 197,155 + -0.6 197,172 + -0.4 197,215 + -0.6 197,215 + +2.0 197,223 - +0.5 197,234 - +0.7 197,297 + -0.9 197,307 - -0.6 197,411 + HP15_210 0.19 +0.7 197,445 - HP15_210 0.22 +1.2 197,594 - HP15_210 0.35 +1.7 197,594 - HP15_210 0.35 +2.0 197,710 + HP15_210 0.45 -0.7 197,717 + HP15_210 0.46 -1.1 197,725 - HP15_210 0.47 +0.0 197,743 + HP15_210 0.48 -1.3 197,751 - HP15_210 0.49 +1.1 197,800 + HP15_210 0.53 +0.2 197,925 - HP15_210 0.64 +0.7 197,925 - HP15_210 0.64 -0.4 198,011 - HP15_210 0.72 +1.3 198,029 + HP15_210 0.74 -0.1
Or see this region's nucleotide sequence