Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2013 and HP15_2014 are separated by 129 nucleotides HP15_2014 and HP15_2015 are separated by 135 nucleotides
HP15_2013: HP15_2013 - extracellular ligand-binding receptor, at 2,113,356 to 2,114,645
_2013
HP15_2014: HP15_2014 - extracellular ligand-binding receptor, at 2,114,775 to 2,116,163
_2014
HP15_2015: HP15_2015 - inner-membrane translocator, at 2,116,299 to 2,117,195
_2015
Position (kb)
2114
2115
2116
2117 Strain fitness (log2 ratio)
-1
0
1
2 at 2114.030 kb on - strand, within HP15_2013 at 2114.067 kb on - strand, within HP15_2013 at 2114.149 kb on - strand, within HP15_2013 at 2114.336 kb on - strand, within HP15_2013 at 2114.381 kb on + strand, within HP15_2013 at 2114.426 kb on - strand, within HP15_2013 at 2114.545 kb on + strand at 2114.809 kb on + strand at 2114.953 kb on - strand, within HP15_2014 at 2115.016 kb on - strand, within HP15_2014 at 2115.127 kb on - strand, within HP15_2014 at 2115.432 kb on + strand, within HP15_2014 at 2115.546 kb on + strand, within HP15_2014 at 2115.554 kb on - strand, within HP15_2014 at 2115.594 kb on - strand, within HP15_2014 at 2115.649 kb on - strand, within HP15_2014 at 2115.702 kb on + strand, within HP15_2014 at 2115.726 kb on - strand, within HP15_2014 at 2115.862 kb on - strand, within HP15_2014 at 2115.885 kb on - strand, within HP15_2014 at 2115.885 kb on - strand, within HP15_2014 at 2115.904 kb on + strand, within HP15_2014 at 2115.904 kb on + strand, within HP15_2014 at 2115.912 kb on - strand, within HP15_2014 at 2115.937 kb on + strand, within HP15_2014 at 2116.031 kb on + strand at 2116.117 kb on + strand at 2116.125 kb on - strand at 2116.154 kb on + strand at 2116.162 kb on - strand at 2116.265 kb on + strand at 2116.342 kb on + strand at 2116.547 kb on + strand, within HP15_2015 at 2116.559 kb on + strand, within HP15_2015 at 2116.567 kb on - strand, within HP15_2015 at 2116.615 kb on + strand, within HP15_2015 at 2116.631 kb on + strand, within HP15_2015 at 2116.639 kb on - strand, within HP15_2015 at 2116.696 kb on - strand, within HP15_2015 at 2116.697 kb on - strand, within HP15_2015 at 2116.703 kb on + strand, within HP15_2015 at 2116.785 kb on + strand, within HP15_2015 at 2116.797 kb on - strand, within HP15_2015 at 2116.797 kb on - strand, within HP15_2015 at 2116.848 kb on + strand, within HP15_2015 at 2116.975 kb on + strand, within HP15_2015 at 2117.109 kb on - strand at 2117.127 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 2,114,030 - HP15_2013 0.52 +1.9 2,114,067 - HP15_2013 0.55 +2.1 2,114,149 - HP15_2013 0.61 +1.4 2,114,336 - HP15_2013 0.76 -0.2 2,114,381 + HP15_2013 0.79 -0.8 2,114,426 - HP15_2013 0.83 +0.9 2,114,545 + +1.9 2,114,809 + -1.0 2,114,953 - HP15_2014 0.13 +2.2 2,115,016 - HP15_2014 0.17 +1.7 2,115,127 - HP15_2014 0.25 -0.8 2,115,432 + HP15_2014 0.47 +2.0 2,115,546 + HP15_2014 0.56 +0.9 2,115,554 - HP15_2014 0.56 +1.9 2,115,594 - HP15_2014 0.59 -0.5 2,115,649 - HP15_2014 0.63 -0.9 2,115,702 + HP15_2014 0.67 +2.0 2,115,726 - HP15_2014 0.68 -0.6 2,115,862 - HP15_2014 0.78 +2.3 2,115,885 - HP15_2014 0.80 -0.3 2,115,885 - HP15_2014 0.80 -0.4 2,115,904 + HP15_2014 0.81 +1.9 2,115,904 + HP15_2014 0.81 +2.0 2,115,912 - HP15_2014 0.82 +2.2 2,115,937 + HP15_2014 0.84 +0.1 2,116,031 + +0.1 2,116,117 + +1.7 2,116,125 - +0.4 2,116,154 + +1.0 2,116,162 - -0.4 2,116,265 + -0.2 2,116,342 + +2.1 2,116,547 + HP15_2015 0.28 -1.0 2,116,559 + HP15_2015 0.29 -0.5 2,116,567 - HP15_2015 0.30 -0.7 2,116,615 + HP15_2015 0.35 +1.9 2,116,631 + HP15_2015 0.37 +1.9 2,116,639 - HP15_2015 0.38 +0.5 2,116,696 - HP15_2015 0.44 -0.2 2,116,697 - HP15_2015 0.44 -1.5 2,116,703 + HP15_2015 0.45 +1.6 2,116,785 + HP15_2015 0.54 -0.2 2,116,797 - HP15_2015 0.56 +1.9 2,116,797 - HP15_2015 0.56 +2.4 2,116,848 + HP15_2015 0.61 -0.5 2,116,975 + HP15_2015 0.75 +0.2 2,117,109 - +0.2 2,117,127 + +0.4
Or see this region's nucleotide sequence