Strain Fitness in Marinobacter adhaerens HP15 around HP15_2014

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2013 and HP15_2014 are separated by 129 nucleotidesHP15_2014 and HP15_2015 are separated by 135 nucleotides HP15_2013: HP15_2013 - extracellular ligand-binding receptor, at 2,113,356 to 2,114,645 _2013 HP15_2014: HP15_2014 - extracellular ligand-binding receptor, at 2,114,775 to 2,116,163 _2014 HP15_2015: HP15_2015 - inner-membrane translocator, at 2,116,299 to 2,117,195 _2015 Position (kb) 2114 2115 2116 2117Strain fitness (log2 ratio) -1 0 1 2at 2114.030 kb on - strand, within HP15_2013at 2114.067 kb on - strand, within HP15_2013at 2114.149 kb on - strand, within HP15_2013at 2114.336 kb on - strand, within HP15_2013at 2114.381 kb on + strand, within HP15_2013at 2114.426 kb on - strand, within HP15_2013at 2114.545 kb on + strandat 2114.809 kb on + strandat 2114.953 kb on - strand, within HP15_2014at 2115.016 kb on - strand, within HP15_2014at 2115.127 kb on - strand, within HP15_2014at 2115.432 kb on + strand, within HP15_2014at 2115.546 kb on + strand, within HP15_2014at 2115.554 kb on - strand, within HP15_2014at 2115.594 kb on - strand, within HP15_2014at 2115.649 kb on - strand, within HP15_2014at 2115.702 kb on + strand, within HP15_2014at 2115.726 kb on - strand, within HP15_2014at 2115.862 kb on - strand, within HP15_2014at 2115.885 kb on - strand, within HP15_2014at 2115.885 kb on - strand, within HP15_2014at 2115.904 kb on + strand, within HP15_2014at 2115.904 kb on + strand, within HP15_2014at 2115.912 kb on - strand, within HP15_2014at 2115.937 kb on + strand, within HP15_2014at 2116.031 kb on + strandat 2116.117 kb on + strandat 2116.125 kb on - strandat 2116.154 kb on + strandat 2116.162 kb on - strandat 2116.265 kb on + strandat 2116.342 kb on + strandat 2116.547 kb on + strand, within HP15_2015at 2116.559 kb on + strand, within HP15_2015at 2116.567 kb on - strand, within HP15_2015at 2116.615 kb on + strand, within HP15_2015at 2116.631 kb on + strand, within HP15_2015at 2116.639 kb on - strand, within HP15_2015at 2116.696 kb on - strand, within HP15_2015at 2116.697 kb on - strand, within HP15_2015at 2116.703 kb on + strand, within HP15_2015at 2116.785 kb on + strand, within HP15_2015at 2116.797 kb on - strand, within HP15_2015at 2116.797 kb on - strand, within HP15_2015at 2116.848 kb on + strand, within HP15_2015at 2116.975 kb on + strand, within HP15_2015at 2117.109 kb on - strandat 2117.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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2,114,030 - HP15_2013 0.52 +1.9
2,114,067 - HP15_2013 0.55 +2.1
2,114,149 - HP15_2013 0.61 +1.4
2,114,336 - HP15_2013 0.76 -0.2
2,114,381 + HP15_2013 0.79 -0.8
2,114,426 - HP15_2013 0.83 +0.9
2,114,545 + +1.9
2,114,809 + -1.0
2,114,953 - HP15_2014 0.13 +2.2
2,115,016 - HP15_2014 0.17 +1.7
2,115,127 - HP15_2014 0.25 -0.8
2,115,432 + HP15_2014 0.47 +2.0
2,115,546 + HP15_2014 0.56 +0.9
2,115,554 - HP15_2014 0.56 +1.9
2,115,594 - HP15_2014 0.59 -0.5
2,115,649 - HP15_2014 0.63 -0.9
2,115,702 + HP15_2014 0.67 +2.0
2,115,726 - HP15_2014 0.68 -0.6
2,115,862 - HP15_2014 0.78 +2.3
2,115,885 - HP15_2014 0.80 -0.3
2,115,885 - HP15_2014 0.80 -0.4
2,115,904 + HP15_2014 0.81 +1.9
2,115,904 + HP15_2014 0.81 +2.0
2,115,912 - HP15_2014 0.82 +2.2
2,115,937 + HP15_2014 0.84 +0.1
2,116,031 + +0.1
2,116,117 + +1.7
2,116,125 - +0.4
2,116,154 + +1.0
2,116,162 - -0.4
2,116,265 + -0.2
2,116,342 + +2.1
2,116,547 + HP15_2015 0.28 -1.0
2,116,559 + HP15_2015 0.29 -0.5
2,116,567 - HP15_2015 0.30 -0.7
2,116,615 + HP15_2015 0.35 +1.9
2,116,631 + HP15_2015 0.37 +1.9
2,116,639 - HP15_2015 0.38 +0.5
2,116,696 - HP15_2015 0.44 -0.2
2,116,697 - HP15_2015 0.44 -1.5
2,116,703 + HP15_2015 0.45 +1.6
2,116,785 + HP15_2015 0.54 -0.2
2,116,797 - HP15_2015 0.56 +1.9
2,116,797 - HP15_2015 0.56 +2.4
2,116,848 + HP15_2015 0.61 -0.5
2,116,975 + HP15_2015 0.75 +0.2
2,117,109 - +0.2
2,117,127 + +0.4

Or see this region's nucleotide sequence