Experiment: Urea as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2007 and HP15_2008 are separated by 131 nucleotides HP15_2008 and HP15_2009 overlap by 1 nucleotides HP15_2009 and HP15_2010 are separated by 268 nucleotides
HP15_2007: HP15_2007 - prophage lambda integrase, at 2,107,666 to 2,108,787
_2007
HP15_2008: HP15_2008 - conserved hypothetical protein, at 2,108,919 to 2,109,446
_2008
HP15_2009: HP15_2009 - conserved hypothetical protein, at 2,109,446 to 2,109,859
_2009
HP15_2010: HP15_2010 - sensor histidine kinase, at 2,110,128 to 2,111,972
_2010
Position (kb)
2108
2109
2110 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2108.039 kb on - strand, within HP15_2007 at 2108.093 kb on + strand, within HP15_2007 at 2108.134 kb on + strand, within HP15_2007 at 2108.143 kb on - strand, within HP15_2007 at 2108.210 kb on + strand, within HP15_2007 at 2108.216 kb on + strand, within HP15_2007 at 2108.216 kb on + strand, within HP15_2007 at 2108.256 kb on - strand, within HP15_2007 at 2108.268 kb on - strand, within HP15_2007 at 2108.347 kb on + strand, within HP15_2007 at 2108.348 kb on - strand, within HP15_2007 at 2108.386 kb on + strand, within HP15_2007 at 2108.416 kb on - strand, within HP15_2007 at 2108.433 kb on - strand, within HP15_2007 at 2108.525 kb on + strand, within HP15_2007 at 2108.533 kb on + strand, within HP15_2007 at 2108.534 kb on - strand, within HP15_2007 at 2108.546 kb on + strand, within HP15_2007 at 2108.546 kb on - strand, within HP15_2007 at 2108.647 kb on - strand, within HP15_2007 at 2108.724 kb on + strand at 2108.738 kb on + strand at 2108.746 kb on - strand at 2108.999 kb on + strand, within HP15_2008 at 2109.152 kb on + strand, within HP15_2008 at 2109.269 kb on - strand, within HP15_2008 at 2109.845 kb on - strand at 2109.943 kb on + strand at 2109.951 kb on - strand at 2109.951 kb on - strand at 2110.058 kb on + strand at 2110.198 kb on + strand at 2110.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Urea as (N) remove 2,108,039 - HP15_2007 0.33 -1.1 2,108,093 + HP15_2007 0.38 +1.9 2,108,134 + HP15_2007 0.42 -0.7 2,108,143 - HP15_2007 0.43 +0.4 2,108,210 + HP15_2007 0.48 -0.6 2,108,216 + HP15_2007 0.49 -0.3 2,108,216 + HP15_2007 0.49 +1.4 2,108,256 - HP15_2007 0.53 +1.5 2,108,268 - HP15_2007 0.54 +2.0 2,108,347 + HP15_2007 0.61 -2.6 2,108,348 - HP15_2007 0.61 -0.8 2,108,386 + HP15_2007 0.64 -0.8 2,108,416 - HP15_2007 0.67 +0.3 2,108,433 - HP15_2007 0.68 -0.2 2,108,525 + HP15_2007 0.77 -0.1 2,108,533 + HP15_2007 0.77 -0.4 2,108,534 - HP15_2007 0.77 -0.0 2,108,546 + HP15_2007 0.78 +0.1 2,108,546 - HP15_2007 0.78 +3.4 2,108,647 - HP15_2007 0.87 +2.2 2,108,724 + -0.0 2,108,738 + +0.4 2,108,746 - -0.8 2,108,999 + HP15_2008 0.15 +2.0 2,109,152 + HP15_2008 0.44 +1.4 2,109,269 - HP15_2008 0.66 +0.4 2,109,845 - -0.3 2,109,943 + +1.8 2,109,951 - -0.2 2,109,951 - -0.4 2,110,058 + -0.2 2,110,198 + +2.6 2,110,206 - +1.6
Or see this region's nucleotide sequence