Strain Fitness in Marinobacter adhaerens HP15 around HP15_1948

Experiment: Urea as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1946 and HP15_tRNA35 are separated by 55 nucleotidesHP15_tRNA35 and HP15_1947 are separated by 182 nucleotidesHP15_1947 and HP15_1948 are separated by 222 nucleotidesHP15_1948 and HP15_1949 are separated by 631 nucleotides HP15_1946: HP15_1946 - membrane protein containing DUF6, transmembrane, at 2,065,503 to 2,066,453 _1946 HP15_tRNA35: HP15_tRNA35 - tRNA-Val, at 2,066,509 to 2,066,585 _tRNA35 HP15_1947: HP15_1947 - hypothetical protein, at 2,066,768 to 2,067,004 _1947 HP15_1948: HP15_1948 - hypothetical protein, at 2,067,227 to 2,067,409 _1948 HP15_1949: HP15_1949 - hypothetical protein, at 2,068,041 to 2,070,623 _1949 Position (kb) 2067 2068Strain fitness (log2 ratio) -2 -1 0 1 2at 2066.248 kb on + strand, within HP15_1946at 2066.250 kb on - strand, within HP15_1946at 2066.269 kb on - strand, within HP15_1946at 2066.302 kb on - strand, within HP15_1946at 2066.304 kb on + strand, within HP15_1946at 2066.307 kb on - strand, within HP15_1946at 2066.309 kb on + strand, within HP15_1946at 2066.317 kb on - strand, within HP15_1946at 2066.359 kb on + strandat 2066.364 kb on + strandat 2066.393 kb on + strandat 2066.401 kb on - strandat 2066.505 kb on + strandat 2066.693 kb on + strandat 2066.725 kb on - strandat 2066.788 kb on + strandat 2066.945 kb on + strand, within HP15_1947at 2066.949 kb on + strand, within HP15_1947at 2067.110 kb on + strandat 2067.162 kb on - strandat 2067.162 kb on - strandat 2067.194 kb on + strandat 2067.222 kb on - strandat 2067.286 kb on - strand, within HP15_1948at 2067.288 kb on + strand, within HP15_1948at 2067.343 kb on + strand, within HP15_1948at 2067.343 kb on + strand, within HP15_1948at 2067.351 kb on - strand, within HP15_1948at 2067.472 kb on - strandat 2067.762 kb on + strandat 2067.908 kb on + strandat 2068.011 kb on + strandat 2068.012 kb on + strandat 2068.018 kb on + strandat 2068.171 kb on - strandat 2068.171 kb on - strandat 2068.201 kb on - strandat 2068.248 kb on - strandat 2068.261 kb on + strandat 2068.300 kb on + strand, within HP15_1949at 2068.350 kb on - strand, within HP15_1949

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea as (N)
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2,066,248 + HP15_1946 0.78 -0.1
2,066,250 - HP15_1946 0.79 -0.7
2,066,269 - HP15_1946 0.81 +0.8
2,066,302 - HP15_1946 0.84 -0.6
2,066,304 + HP15_1946 0.84 +1.7
2,066,307 - HP15_1946 0.85 +1.7
2,066,309 + HP15_1946 0.85 -0.4
2,066,317 - HP15_1946 0.86 -1.2
2,066,359 + -1.4
2,066,364 + -0.2
2,066,393 + -0.2
2,066,401 - -1.1
2,066,505 + -0.1
2,066,693 + +2.0
2,066,725 - -1.5
2,066,788 + -1.9
2,066,945 + HP15_1947 0.75 -0.8
2,066,949 + HP15_1947 0.76 +1.7
2,067,110 + -0.1
2,067,162 - +0.7
2,067,162 - -1.3
2,067,194 + +1.9
2,067,222 - +0.9
2,067,286 - HP15_1948 0.32 -0.6
2,067,288 + HP15_1948 0.33 -0.3
2,067,343 + HP15_1948 0.63 -0.8
2,067,343 + HP15_1948 0.63 +1.2
2,067,351 - HP15_1948 0.68 -0.5
2,067,472 - +0.0
2,067,762 + +2.0
2,067,908 + -0.9
2,068,011 + -0.2
2,068,012 + +2.4
2,068,018 + +0.5
2,068,171 - -0.3
2,068,171 - -0.4
2,068,201 - +0.4
2,068,248 - -0.9
2,068,261 + -0.7
2,068,300 + HP15_1949 0.10 -1.6
2,068,350 - HP15_1949 0.12 -0.5

Or see this region's nucleotide sequence