Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18300

Experiment: m.b. nitrate 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. nitrate 50 mM
1,911,747	+				-0.1
1,911,768	+				+0.1
1,911,768	+				+0.7
1,911,776	-				+0.9
1,911,793	+				-1.5
1,911,793	+				-0.4
1,911,793	+				-0.6
1,911,801	-				+0.3
1,911,811	-				+0.2
1,911,818	-				+1.4
1,911,848	-				+0.1
1,911,874	+				+1.6
1,911,894	+				-0.2
1,911,916	-		PGA1_c18280	0.12	-0.5
1,911,935	+		PGA1_c18280	0.16	+1.1
1,911,948	-		PGA1_c18280	0.19	+0.0
1,911,959	-		PGA1_c18280	0.22	+0.7
1,911,963	+		PGA1_c18280	0.22	-1.9
1,912,059	-		PGA1_c18280	0.44	-1.4
1,912,086	+		PGA1_c18280	0.50	+1.4
1,912,086	+		PGA1_c18280	0.50	-0.1
1,912,106	+		PGA1_c18280	0.54	+0.5
1,912,154	+		PGA1_c18280	0.65	+1.6
1,912,154	+		PGA1_c18280	0.65	+0.2
1,912,169	-		PGA1_c18280	0.68	-1.4
1,912,194	+		PGA1_c18280	0.74	-0.0
1,912,207	+		PGA1_c18280	0.77	-0.2
1,912,279	+				-0.1
1,912,279	+				-0.2
1,912,340	+				+0.7
1,912,353	+		PGA1_c18290	0.10	-0.8
1,912,361	-		PGA1_c18290	0.12	-1.5
1,912,361	-		PGA1_c18290	0.12	-1.5
1,912,386	+		PGA1_c18290	0.18	+0.4
1,912,418	+		PGA1_c18290	0.26	-0.2
1,912,418	+		PGA1_c18290	0.26	+0.3
1,912,418	+		PGA1_c18290	0.26	-0.4
1,912,426	-		PGA1_c18290	0.28	+0.1
1,912,431	+		PGA1_c18290	0.29	-0.9
1,912,517	-		PGA1_c18290	0.50	-1.2
1,912,553	+		PGA1_c18290	0.59	-0.6
1,912,579	+		PGA1_c18290	0.65	+0.8
1,912,587	-		PGA1_c18290	0.67	-0.5
1,912,587	-		PGA1_c18290	0.67	+1.3
1,912,620	-		PGA1_c18290	0.75	+0.1
1,912,620	-		PGA1_c18290	0.75	-0.8
1,912,631	+		PGA1_c18290	0.78	+0.9
1,912,631	+		PGA1_c18290	0.78	-0.2
1,912,639	-		PGA1_c18290	0.80	+0.4
1,912,665	-		PGA1_c18290	0.86	+0.4
1,912,732	+				-0.7
1,912,737	+				+0.1
1,912,744	+				-1.9
1,912,745	-				+0.6
1,912,746	-				-2.5
1,912,746	-				-0.2
1,912,752	-				+0.2
1,912,752	-				+0.4
1,912,752	-				+0.9
1,912,752	-				+0.0
1,912,752	-				-0.1
1,912,752	-				-1.4
1,912,752	-				-1.1
1,912,752	-				-0.5
1,912,838	+				-0.6
1,912,876	+		PGA1_c18300	0.11	-0.1
1,912,993	+		PGA1_c18300	0.21	+2.0
1,912,993	+		PGA1_c18300	0.21	+0.9
1,913,001	-		PGA1_c18300	0.22	-0.1
1,913,110	+		PGA1_c18300	0.31	+0.1
1,913,118	-		PGA1_c18300	0.32	-0.7
1,913,118	-		PGA1_c18300	0.32	+0.5
1,913,136	+		PGA1_c18300	0.34	+0.3
1,913,143	+		PGA1_c18300	0.34	-1.1
1,913,168	+		PGA1_c18300	0.36	+0.6
1,913,176	-		PGA1_c18300	0.37	+1.7
1,913,176	-		PGA1_c18300	0.37	-0.9
1,913,176	-		PGA1_c18300	0.37	+1.0
1,913,176	-		PGA1_c18300	0.37	+0.7
1,913,224	+		PGA1_c18300	0.41	+0.8
1,913,232	-		PGA1_c18300	0.42	-0.3
1,913,280	+		PGA1_c18300	0.46	-2.2
1,913,288	-		PGA1_c18300	0.47	-0.6
1,913,295	+		PGA1_c18300	0.47	-0.2
1,913,303	-		PGA1_c18300	0.48	-0.3
1,913,308	-		PGA1_c18300	0.48	-0.2
1,913,308	-		PGA1_c18300	0.48	+1.9
1,913,336	+		PGA1_c18300	0.51	+0.6
1,913,344	+		PGA1_c18300	0.52	+1.0
1,913,344	-		PGA1_c18300	0.52	+1.5
1,913,370	+		PGA1_c18300	0.54	+0.2
1,913,385	+		PGA1_c18300	0.55	+0.2
1,913,393	-		PGA1_c18300	0.56	+0.8
1,913,404	-		PGA1_c18300	0.57	-0.8
1,913,450	+		PGA1_c18300	0.61	+0.9
1,913,518	-		PGA1_c18300	0.67	+0.6
1,913,518	-		PGA1_c18300	0.67	+0.4
1,913,553	+		PGA1_c18300	0.70	+0.6
1,913,561	-		PGA1_c18300	0.70	-1.2
1,913,627	+		PGA1_c18300	0.76	-1.0
1,913,627	+		PGA1_c18300	0.76	-1.4
1,913,627	+		PGA1_c18300	0.76	+0.9
1,913,642	-		PGA1_c18300	0.77	+0.4
1,913,769	-		PGA1_c18300	0.88	+2.1
1,913,774	-		PGA1_c18300	0.89	+0.4
1,913,786	+		PGA1_c18300	0.90	+0.3
1,913,847	+				-1.1
1,913,847	+				+3.0
1,913,847	+				-0.4
1,913,855	-				+0.1
1,913,855	-				+0.9
1,913,879	+				+0.6
1,913,879	+				-0.5
1,913,879	+				+0.0
1,913,884	+				+0.9
1,913,946	-				+0.3
1,914,010	-		PGA1_c18310	0.19	+0.6
1,914,010	-		PGA1_c18310	0.19	-0.7
1,914,042	+		PGA1_c18310	0.25	-1.0
1,914,235	-		PGA1_c18310	0.59	+0.6
1,914,254	+		PGA1_c18310	0.63	+1.1
1,914,254	+		PGA1_c18310	0.63	-0.1
1,914,254	+		PGA1_c18310	0.63	-0.1
1,914,254	+		PGA1_c18310	0.63	-0.1
1,914,262	-		PGA1_c18310	0.64	-0.5
1,914,262	-		PGA1_c18310	0.64	-0.8
1,914,262	-		PGA1_c18310	0.64	-1.0
1,914,264	+		PGA1_c18310	0.65	-0.4
1,914,264	+		PGA1_c18310	0.65	-1.0
1,914,272	-		PGA1_c18310	0.66	+0.0
1,914,298	+		PGA1_c18310	0.71	+1.0
1,914,391	+		PGA1_c18310	0.87	-1.0
1,914,391	+		PGA1_c18310	0.87	+1.1
1,914,399	-		PGA1_c18310	0.89	+0.3
1,914,409	-				-0.0
1,914,430	-				+1.0
1,914,467	+				-0.6
1,914,475	-				+0.8
1,914,579	+		PGA1_c18320	0.21	+1.0
1,914,587	-		PGA1_c18320	0.22	-2.2
1,914,605	+		PGA1_c18320	0.25	-0.1
1,914,615	+		PGA1_c18320	0.27	-0.8
1,914,623	-		PGA1_c18320	0.28	+0.3
1,914,623	-		PGA1_c18320	0.28	+0.4
1,914,623	-		PGA1_c18320	0.28	+1.1
1,914,685	+		PGA1_c18320	0.38	-0.5
1,914,691	+		PGA1_c18320	0.39	+0.2
1,914,724	+		PGA1_c18320	0.45	-0.1
1,914,725	-		PGA1_c18320	0.45	-0.3
1,914,725	-		PGA1_c18320	0.45	+0.7
1,914,725	-		PGA1_c18320	0.45	-0.2
1,914,738	+		PGA1_c18320	0.47	+0.8
1,914,770	+		PGA1_c18320	0.52	-1.6
1,914,780	-		PGA1_c18320	0.54	-0.2
1,914,780	-		PGA1_c18320	0.54	+0.5
1,914,809	+		PGA1_c18320	0.59	-1.4
1,914,815	+		PGA1_c18320	0.60	-0.2
1,914,823	-		PGA1_c18320	0.61	+0.2
1,914,829	-		PGA1_c18320	0.62	-0.4
1,914,867	+		PGA1_c18320	0.68	-1.3
1,914,867	+		PGA1_c18320	0.68	-0.7
1,914,875	-		PGA1_c18320	0.70	+0.2