Experiment: LB, microplate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0675 and Sama_0676 are separated by 309 nucleotides Sama_0676 and Sama_0677 are separated by 112 nucleotides
Sama_0675: Sama_0675 - AcrB/AcrD/AcrF family transporter (RefSeq), at 831,444 to 834,530
_0675
Sama_0676: Sama_0676 - hypothetical protein (RefSeq), at 834,840 to 835,175
_0676
Sama_0677: Sama_0677 - U32 family peptidase (RefSeq), at 835,288 to 837,207
_0677
Position (kb) 834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 834.059 kb on + strand, within Sama_0675 at 834.060 kb on - strand, within Sama_0675 at 834.060 kb on - strand, within Sama_0675 at 834.077 kb on - strand, within Sama_0675 at 834.077 kb on - strand, within Sama_0675 at 834.077 kb on - strand, within Sama_0675 at 834.077 kb on - strand, within Sama_0675 at 834.087 kb on - strand, within Sama_0675 at 834.099 kb on - strand, within Sama_0675 at 834.099 kb on - strand, within Sama_0675 at 834.143 kb on + strand, within Sama_0675 at 834.143 kb on + strand, within Sama_0675 at 834.143 kb on + strand, within Sama_0675 at 834.164 kb on - strand, within Sama_0675 at 834.186 kb on - strand, within Sama_0675 at 834.227 kb on + strand at 834.227 kb on + strand at 834.227 kb on + strand at 834.228 kb on - strand at 834.228 kb on - strand at 834.238 kb on + strand at 834.238 kb on + strand at 834.309 kb on - strand at 834.331 kb on + strand at 834.331 kb on + strand at 834.331 kb on + strand at 834.331 kb on + strand at 834.332 kb on - strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.335 kb on + strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.336 kb on - strand at 834.374 kb on + strand at 834.468 kb on + strand at 834.468 kb on + strand at 834.468 kb on + strand at 834.469 kb on - strand at 834.469 kb on - strand at 834.469 kb on - strand at 834.469 kb on - strand at 834.487 kb on + strand at 834.487 kb on + strand at 834.488 kb on - strand at 834.488 kb on - strand at 834.502 kb on - strand at 834.531 kb on + strand at 834.531 kb on + strand at 834.531 kb on + strand at 834.532 kb on - strand at 834.532 kb on - strand at 834.544 kb on + strand at 834.545 kb on - strand at 834.581 kb on + strand at 834.611 kb on + strand at 834.679 kb on - strand at 834.679 kb on - strand at 834.679 kb on - strand at 834.679 kb on - strand at 834.757 kb on + strand at 834.757 kb on + strand at 834.757 kb on + strand at 834.758 kb on - strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.831 kb on + strand at 834.832 kb on - strand at 834.832 kb on - strand at 834.832 kb on - strand at 834.832 kb on - strand at 834.832 kb on - strand at 834.840 kb on - strand at 834.902 kb on + strand, within Sama_0676 at 834.902 kb on + strand, within Sama_0676 at 834.902 kb on + strand, within Sama_0676 at 834.902 kb on + strand, within Sama_0676 at 834.902 kb on + strand, within Sama_0676 at 834.903 kb on - strand, within Sama_0676 at 834.903 kb on - strand, within Sama_0676 at 834.903 kb on - strand, within Sama_0676 at 834.950 kb on + strand, within Sama_0676 at 834.951 kb on - strand, within Sama_0676 at 834.969 kb on + strand, within Sama_0676 at 835.027 kb on - strand, within Sama_0676 at 835.040 kb on + strand, within Sama_0676 at 835.040 kb on + strand, within Sama_0676 at 835.040 kb on + strand, within Sama_0676 at 835.041 kb on - strand, within Sama_0676 at 835.065 kb on + strand, within Sama_0676 at 835.065 kb on + strand, within Sama_0676 at 835.066 kb on - strand, within Sama_0676 at 835.066 kb on - strand, within Sama_0676 at 835.087 kb on + strand, within Sama_0676 at 835.087 kb on + strand, within Sama_0676 at 835.087 kb on + strand, within Sama_0676 at 835.087 kb on + strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.088 kb on - strand, within Sama_0676 at 835.130 kb on - strand, within Sama_0676 at 835.146 kb on + strand at 835.147 kb on - strand at 835.147 kb on - strand at 835.147 kb on - strand at 835.165 kb on + strand at 835.198 kb on + strand at 835.198 kb on + strand at 835.199 kb on - strand at 835.199 kb on - strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.226 kb on + strand at 835.227 kb on - strand at 835.227 kb on - strand at 835.227 kb on - strand at 835.227 kb on - strand at 835.228 kb on + strand at 835.228 kb on + strand at 835.228 kb on + strand at 835.293 kb on + strand at 835.294 kb on - strand at 835.294 kb on - strand at 835.314 kb on + strand at 835.314 kb on + strand at 835.369 kb on - strand at 835.371 kb on + strand at 835.371 kb on + strand at 835.372 kb on - strand at 835.447 kb on + strand at 835.447 kb on + strand at 835.447 kb on + strand at 835.447 kb on + strand at 835.447 kb on + strand at 835.448 kb on - strand at 835.448 kb on - strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.451 kb on + strand at 835.452 kb on - strand at 835.452 kb on - strand at 835.452 kb on - strand at 835.452 kb on - strand at 835.452 kb on - strand at 835.534 kb on + strand, within Sama_0677 at 835.535 kb on - strand, within Sama_0677 at 835.618 kb on + strand, within Sama_0677 at 835.618 kb on + strand, within Sama_0677 at 835.618 kb on + strand, within Sama_0677 at 835.618 kb on + strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.619 kb on - strand, within Sama_0677 at 835.654 kb on - strand, within Sama_0677 at 835.654 kb on - strand, within Sama_0677 at 835.842 kb on + strand, within Sama_0677 at 835.843 kb on - strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.882 kb on + strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.883 kb on - strand, within Sama_0677 at 835.885 kb on - strand, within Sama_0677 at 835.885 kb on - strand, within Sama_0677 at 835.897 kb on + strand, within Sama_0677 at 835.897 kb on + strand, within Sama_0677 at 835.898 kb on - strand, within Sama_0677 at 835.898 kb on - strand, within Sama_0677 at 835.899 kb on + strand, within Sama_0677 at 835.900 kb on - strand, within Sama_0677 at 835.947 kb on + strand, within Sama_0677 at 835.947 kb on + strand, within Sama_0677 at 835.947 kb on + strand, within Sama_0677 at 835.948 kb on - strand, within Sama_0677 at 835.965 kb on + strand, within Sama_0677 at 836.061 kb on + strand, within Sama_0677 at 836.105 kb on - strand, within Sama_0677 at 836.109 kb on - strand, within Sama_0677
Per-strain Table
Position Strand Gene LocusTag Fraction LB, microplate remove 834,059 + Sama_0675 0.85 +0.6 834,060 - Sama_0675 0.85 -0.4 834,060 - Sama_0675 0.85 -0.9 834,077 - Sama_0675 0.85 +0.4 834,077 - Sama_0675 0.85 -0.7 834,077 - Sama_0675 0.85 +0.2 834,077 - Sama_0675 0.85 -0.2 834,087 - Sama_0675 0.86 -2.7 834,099 - Sama_0675 0.86 +0.1 834,099 - Sama_0675 0.86 +0.1 834,143 + Sama_0675 0.87 -0.5 834,143 + Sama_0675 0.87 +0.1 834,143 + Sama_0675 0.87 +2.6 834,164 - Sama_0675 0.88 -0.1 834,186 - Sama_0675 0.89 -0.4 834,227 + -0.5 834,227 + +0.3 834,227 + -1.3 834,228 - +0.8 834,228 - +0.2 834,238 + +0.9 834,238 + +0.2 834,309 - -0.4 834,331 + -0.1 834,331 + +0.3 834,331 + +0.3 834,331 + -0.3 834,332 - -0.2 834,335 + -1.3 834,335 + +0.8 834,335 + -1.9 834,335 + -0.2 834,335 + +0.2 834,335 + -0.4 834,335 + +0.6 834,335 + -0.4 834,336 - -1.5 834,336 - +1.0 834,336 - -1.9 834,336 - +0.1 834,336 - +0.7 834,336 - -1.2 834,336 - +0.1 834,336 - +0.4 834,374 + -0.2 834,468 + +1.1 834,468 + +0.1 834,468 + -0.1 834,469 - -0.9 834,469 - +1.0 834,469 - -1.5 834,469 - -0.9 834,487 + -0.8 834,487 + +0.9 834,488 - +1.6 834,488 - +1.1 834,502 - +1.6 834,531 + -0.1 834,531 + -0.3 834,531 + +0.1 834,532 - +0.4 834,532 - +0.1 834,544 + +2.6 834,545 - +0.1 834,581 + +0.6 834,611 + +0.1 834,679 - +1.3 834,679 - -0.1 834,679 - -0.9 834,679 - +0.1 834,757 + +0.2 834,757 + -0.9 834,757 + +1.6 834,758 - +0.7 834,831 + +0.6 834,831 + +0.7 834,831 + -0.6 834,831 + -0.7 834,831 + -0.8 834,831 + +0.2 834,832 - +0.9 834,832 - +0.4 834,832 - +0.2 834,832 - -0.7 834,832 - -0.6 834,840 - +0.4 834,902 + Sama_0676 0.18 +0.4 834,902 + Sama_0676 0.18 +0.5 834,902 + Sama_0676 0.18 +1.4 834,902 + Sama_0676 0.18 +1.6 834,902 + Sama_0676 0.18 +1.1 834,903 - Sama_0676 0.19 -0.8 834,903 - Sama_0676 0.19 -0.2 834,903 - Sama_0676 0.19 +0.2 834,950 + Sama_0676 0.33 +2.1 834,951 - Sama_0676 0.33 +0.1 834,969 + Sama_0676 0.38 +0.1 835,027 - Sama_0676 0.56 +0.3 835,040 + Sama_0676 0.60 +0.3 835,040 + Sama_0676 0.60 +1.1 835,040 + Sama_0676 0.60 +1.1 835,041 - Sama_0676 0.60 +0.6 835,065 + Sama_0676 0.67 +0.4 835,065 + Sama_0676 0.67 +0.1 835,066 - Sama_0676 0.67 +1.1 835,066 - Sama_0676 0.67 +0.1 835,087 + Sama_0676 0.74 +0.5 835,087 + Sama_0676 0.74 +0.4 835,087 + Sama_0676 0.74 +0.6 835,087 + Sama_0676 0.74 -0.5 835,088 - Sama_0676 0.74 +0.6 835,088 - Sama_0676 0.74 +0.9 835,088 - Sama_0676 0.74 -0.9 835,088 - Sama_0676 0.74 +2.5 835,088 - Sama_0676 0.74 -0.9 835,088 - Sama_0676 0.74 +1.2 835,088 - Sama_0676 0.74 +0.5 835,130 - Sama_0676 0.86 -0.5 835,146 + +0.6 835,147 - -0.4 835,147 - -0.7 835,147 - -0.1 835,165 + -0.2 835,198 + +0.3 835,198 + +0.5 835,199 - +0.5 835,199 - -0.7 835,226 + -0.1 835,226 + +0.1 835,226 + -0.6 835,226 + -0.8 835,226 + +0.8 835,226 + -0.0 835,227 - +0.5 835,227 - +0.8 835,227 - +0.5 835,227 - -0.3 835,228 + +0.1 835,228 + -0.2 835,228 + -0.3 835,293 + -0.5 835,294 - +0.9 835,294 - -0.4 835,314 + +0.2 835,314 + -0.2 835,369 - +2.1 835,371 + +0.1 835,371 + +0.6 835,372 - -0.4 835,447 + +0.6 835,447 + +0.6 835,447 + -0.2 835,447 + +1.1 835,447 + +0.8 835,448 - -0.8 835,448 - -0.5 835,451 + -0.9 835,451 + +1.1 835,451 + +0.3 835,451 + -0.4 835,451 + +0.1 835,451 + -0.5 835,452 - +1.4 835,452 - +1.3 835,452 - -0.4 835,452 - -0.0 835,452 - +0.2 835,534 + Sama_0677 0.13 +1.3 835,535 - Sama_0677 0.13 -1.2 835,618 + Sama_0677 0.17 -1.2 835,618 + Sama_0677 0.17 +0.1 835,618 + Sama_0677 0.17 +1.6 835,618 + Sama_0677 0.17 +1.6 835,619 - Sama_0677 0.17 +0.9 835,619 - Sama_0677 0.17 +0.9 835,619 - Sama_0677 0.17 +1.6 835,619 - Sama_0677 0.17 +1.0 835,619 - Sama_0677 0.17 +1.2 835,619 - Sama_0677 0.17 -0.7 835,619 - Sama_0677 0.17 -1.1 835,654 - Sama_0677 0.19 -0.6 835,654 - Sama_0677 0.19 +0.4 835,842 + Sama_0677 0.29 +0.1 835,843 - Sama_0677 0.29 -0.2 835,882 + Sama_0677 0.31 -0.1 835,882 + Sama_0677 0.31 +0.8 835,882 + Sama_0677 0.31 +0.1 835,882 + Sama_0677 0.31 +0.2 835,882 + Sama_0677 0.31 +0.3 835,882 + Sama_0677 0.31 -1.5 835,882 + Sama_0677 0.31 -0.1 835,882 + Sama_0677 0.31 +1.1 835,882 + Sama_0677 0.31 +1.5 835,882 + Sama_0677 0.31 +1.4 835,882 + Sama_0677 0.31 +2.1 835,882 + Sama_0677 0.31 -1.3 835,882 + Sama_0677 0.31 -0.8 835,883 - Sama_0677 0.31 -0.5 835,883 - Sama_0677 0.31 +1.1 835,883 - Sama_0677 0.31 +0.1 835,883 - Sama_0677 0.31 +0.1 835,883 - Sama_0677 0.31 -0.4 835,883 - Sama_0677 0.31 +0.7 835,885 - Sama_0677 0.31 +0.5 835,885 - Sama_0677 0.31 -0.2 835,897 + Sama_0677 0.32 -1.9 835,897 + Sama_0677 0.32 +0.5 835,898 - Sama_0677 0.32 +1.6 835,898 - Sama_0677 0.32 +0.9 835,899 + Sama_0677 0.32 -0.5 835,900 - Sama_0677 0.32 -0.4 835,947 + Sama_0677 0.34 +1.6 835,947 + Sama_0677 0.34 +0.5 835,947 + Sama_0677 0.34 -0.1 835,948 - Sama_0677 0.34 -0.4 835,965 + Sama_0677 0.35 +1.1 836,061 + Sama_0677 0.40 -0.5 836,105 - Sama_0677 0.43 -0.2 836,109 - Sama_0677 0.43 -0.7
Or see this region's nucleotide sequence