Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07080 and PGA1_c07090 are separated by 129 nucleotides PGA1_c07090 and PGA1_c07100 are separated by 409 nucleotides PGA1_c07100 and PGA1_c07110 are separated by 53 nucleotides
PGA1_c07080: PGA1_c07080 - small-conductance mechanosensitive channel, at 726,925 to 727,731
_c07080
PGA1_c07090: PGA1_c07090 - large-conductance mechanosensitive channel, at 727,861 to 728,295
_c07090
PGA1_c07100: PGA1_c07100 - RTX toxins and related Ca2+-binding proteins, at 728,705 to 731,062
_c07100
PGA1_c07110: PGA1_c07110 - putative sodium/alanine symporter, at 731,116 to 732,660
_c07110
Position (kb) 728
729
730
731
732 Strain fitness (log2 ratio) -2
-1
0
1
2 at 727.713 kb on + strand at 727.721 kb on - strand at 727.830 kb on - strand at 727.839 kb on + strand at 727.958 kb on - strand, within PGA1_c07090 at 727.992 kb on - strand, within PGA1_c07090 at 728.045 kb on - strand, within PGA1_c07090 at 728.086 kb on + strand, within PGA1_c07090 at 728.111 kb on + strand, within PGA1_c07090 at 728.111 kb on + strand, within PGA1_c07090 at 728.111 kb on + strand, within PGA1_c07090 at 728.111 kb on + strand, within PGA1_c07090 at 728.111 kb on + strand, within PGA1_c07090 at 728.111 kb on + strand, within PGA1_c07090 at 728.220 kb on - strand, within PGA1_c07090 at 728.307 kb on - strand at 728.342 kb on + strand at 728.347 kb on + strand at 728.349 kb on + strand at 728.349 kb on + strand at 728.349 kb on + strand at 728.357 kb on - strand at 728.466 kb on - strand at 728.510 kb on + strand at 728.512 kb on - strand at 728.513 kb on - strand at 728.515 kb on + strand at 728.562 kb on + strand at 728.562 kb on + strand at 728.569 kb on + strand at 728.570 kb on - strand at 728.570 kb on - strand at 728.570 kb on - strand at 728.577 kb on - strand at 728.602 kb on + strand at 728.624 kb on + strand at 728.634 kb on + strand at 728.639 kb on + strand at 728.664 kb on - strand at 728.674 kb on - strand at 728.685 kb on + strand at 728.698 kb on - strand at 728.698 kb on - strand at 728.748 kb on - strand at 728.753 kb on + strand at 728.756 kb on - strand at 728.763 kb on + strand at 728.843 kb on - strand at 728.847 kb on + strand at 728.847 kb on + strand at 728.855 kb on - strand at 728.855 kb on - strand at 728.930 kb on + strand at 729.014 kb on + strand, within PGA1_c07100 at 729.022 kb on - strand, within PGA1_c07100 at 729.022 kb on - strand, within PGA1_c07100 at 729.029 kb on + strand, within PGA1_c07100 at 729.052 kb on - strand, within PGA1_c07100 at 729.062 kb on - strand, within PGA1_c07100 at 729.078 kb on - strand, within PGA1_c07100 at 729.095 kb on + strand, within PGA1_c07100 at 729.125 kb on - strand, within PGA1_c07100 at 729.197 kb on - strand, within PGA1_c07100 at 729.202 kb on - strand, within PGA1_c07100 at 729.242 kb on - strand, within PGA1_c07100 at 729.253 kb on + strand, within PGA1_c07100 at 729.315 kb on - strand, within PGA1_c07100 at 729.489 kb on - strand, within PGA1_c07100 at 729.495 kb on + strand, within PGA1_c07100 at 729.512 kb on + strand, within PGA1_c07100 at 729.529 kb on - strand, within PGA1_c07100 at 729.532 kb on + strand, within PGA1_c07100 at 729.552 kb on + strand, within PGA1_c07100 at 729.566 kb on - strand, within PGA1_c07100 at 729.566 kb on - strand, within PGA1_c07100 at 729.575 kb on + strand, within PGA1_c07100 at 729.592 kb on + strand, within PGA1_c07100 at 729.602 kb on + strand, within PGA1_c07100 at 729.610 kb on - strand, within PGA1_c07100 at 729.624 kb on - strand, within PGA1_c07100 at 729.640 kb on + strand, within PGA1_c07100 at 729.672 kb on - strand, within PGA1_c07100 at 729.697 kb on + strand, within PGA1_c07100 at 729.697 kb on + strand, within PGA1_c07100 at 729.705 kb on - strand, within PGA1_c07100 at 729.705 kb on - strand, within PGA1_c07100 at 729.751 kb on - strand, within PGA1_c07100 at 729.822 kb on + strand, within PGA1_c07100 at 729.906 kb on - strand, within PGA1_c07100 at 729.932 kb on + strand, within PGA1_c07100 at 730.037 kb on + strand, within PGA1_c07100 at 730.085 kb on + strand, within PGA1_c07100 at 730.087 kb on + strand, within PGA1_c07100 at 730.087 kb on + strand, within PGA1_c07100 at 730.087 kb on + strand, within PGA1_c07100 at 730.095 kb on - strand, within PGA1_c07100 at 730.095 kb on - strand, within PGA1_c07100 at 730.095 kb on - strand, within PGA1_c07100 at 730.104 kb on + strand, within PGA1_c07100 at 730.127 kb on + strand, within PGA1_c07100 at 730.135 kb on - strand, within PGA1_c07100 at 730.173 kb on - strand, within PGA1_c07100 at 730.192 kb on + strand, within PGA1_c07100 at 730.219 kb on + strand, within PGA1_c07100 at 730.219 kb on + strand, within PGA1_c07100 at 730.324 kb on + strand, within PGA1_c07100 at 730.332 kb on - strand, within PGA1_c07100 at 730.349 kb on + strand, within PGA1_c07100 at 730.354 kb on + strand, within PGA1_c07100 at 730.357 kb on - strand, within PGA1_c07100 at 730.357 kb on - strand, within PGA1_c07100 at 730.357 kb on - strand, within PGA1_c07100 at 730.357 kb on - strand, within PGA1_c07100 at 730.419 kb on + strand, within PGA1_c07100 at 730.426 kb on - strand, within PGA1_c07100 at 730.452 kb on - strand, within PGA1_c07100 at 730.463 kb on - strand, within PGA1_c07100 at 730.463 kb on - strand, within PGA1_c07100 at 730.478 kb on - strand, within PGA1_c07100 at 730.517 kb on - strand, within PGA1_c07100 at 730.569 kb on - strand, within PGA1_c07100 at 730.623 kb on - strand, within PGA1_c07100 at 730.687 kb on + strand, within PGA1_c07100 at 730.762 kb on + strand, within PGA1_c07100 at 730.826 kb on - strand, within PGA1_c07100 at 730.873 kb on + strand at 730.876 kb on - strand at 730.910 kb on - strand at 730.928 kb on + strand at 730.936 kb on - strand at 730.936 kb on - strand at 730.936 kb on - strand at 730.961 kb on + strand at 730.969 kb on - strand at 731.013 kb on + strand at 731.013 kb on + strand at 731.021 kb on - strand at 731.021 kb on - strand at 731.021 kb on - strand at 731.045 kb on - strand at 731.073 kb on + strand at 731.073 kb on + strand at 731.073 kb on + strand at 731.073 kb on + strand at 731.073 kb on - strand at 731.081 kb on - strand at 731.081 kb on - strand at 731.210 kb on + strand at 731.330 kb on - strand, within PGA1_c07110 at 731.353 kb on + strand, within PGA1_c07110 at 731.353 kb on + strand, within PGA1_c07110 at 731.354 kb on + strand, within PGA1_c07110 at 731.354 kb on + strand, within PGA1_c07110 at 731.354 kb on + strand, within PGA1_c07110 at 731.361 kb on - strand, within PGA1_c07110 at 731.362 kb on - strand, within PGA1_c07110 at 731.362 kb on - strand, within PGA1_c07110 at 731.362 kb on - strand, within PGA1_c07110 at 731.362 kb on - strand, within PGA1_c07110 at 731.362 kb on - strand, within PGA1_c07110 at 731.367 kb on + strand, within PGA1_c07110 at 731.435 kb on - strand, within PGA1_c07110 at 731.480 kb on + strand, within PGA1_c07110 at 731.510 kb on + strand, within PGA1_c07110 at 731.524 kb on + strand, within PGA1_c07110 at 731.586 kb on + strand, within PGA1_c07110 at 731.632 kb on - strand, within PGA1_c07110 at 731.638 kb on + strand, within PGA1_c07110 at 731.869 kb on + strand, within PGA1_c07110 at 731.876 kb on + strand, within PGA1_c07110 at 731.876 kb on + strand, within PGA1_c07110 at 731.884 kb on - strand, within PGA1_c07110
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 727,713 + -0.1 727,721 - -0.9 727,830 - -0.3 727,839 + -0.8 727,958 - PGA1_c07090 0.22 -0.4 727,992 - PGA1_c07090 0.30 -1.2 728,045 - PGA1_c07090 0.42 +1.5 728,086 + PGA1_c07090 0.52 +1.6 728,111 + PGA1_c07090 0.57 +1.1 728,111 + PGA1_c07090 0.57 +0.0 728,111 + PGA1_c07090 0.57 +0.3 728,111 + PGA1_c07090 0.57 +0.1 728,111 + PGA1_c07090 0.57 +1.8 728,111 + PGA1_c07090 0.57 -0.3 728,220 - PGA1_c07090 0.83 +0.6 728,307 - +0.4 728,342 + +0.5 728,347 + -0.4 728,349 + +1.0 728,349 + +1.1 728,349 + -1.1 728,357 - +0.5 728,466 - -0.3 728,510 + +0.3 728,512 - +0.1 728,513 - -0.6 728,515 + -0.8 728,562 + -0.0 728,562 + +0.6 728,569 + +0.2 728,570 - +1.1 728,570 - +0.3 728,570 - +0.2 728,577 - +0.7 728,602 + +0.8 728,624 + -0.3 728,634 + +0.4 728,639 + -1.1 728,664 - -1.0 728,674 - +0.1 728,685 + +1.0 728,698 - -0.2 728,698 - -0.3 728,748 - -0.2 728,753 + +0.0 728,756 - -0.9 728,763 + +2.7 728,843 - -1.3 728,847 + +0.9 728,847 + +0.5 728,855 - +0.3 728,855 - +0.7 728,930 + -0.3 729,014 + PGA1_c07100 0.13 -0.3 729,022 - PGA1_c07100 0.13 -0.2 729,022 - PGA1_c07100 0.13 +0.1 729,029 + PGA1_c07100 0.14 -0.9 729,052 - PGA1_c07100 0.15 -1.0 729,062 - PGA1_c07100 0.15 -1.6 729,078 - PGA1_c07100 0.16 -2.6 729,095 + PGA1_c07100 0.17 -0.8 729,125 - PGA1_c07100 0.18 -2.1 729,197 - PGA1_c07100 0.21 -0.3 729,202 - PGA1_c07100 0.21 -0.6 729,242 - PGA1_c07100 0.23 +1.0 729,253 + PGA1_c07100 0.23 -0.5 729,315 - PGA1_c07100 0.26 +0.2 729,489 - PGA1_c07100 0.33 +0.6 729,495 + PGA1_c07100 0.34 -1.5 729,512 + PGA1_c07100 0.34 -1.5 729,529 - PGA1_c07100 0.35 -0.8 729,532 + PGA1_c07100 0.35 -2.7 729,552 + PGA1_c07100 0.36 -0.2 729,566 - PGA1_c07100 0.37 -0.3 729,566 - PGA1_c07100 0.37 +0.1 729,575 + PGA1_c07100 0.37 +1.1 729,592 + PGA1_c07100 0.38 -0.5 729,602 + PGA1_c07100 0.38 -2.0 729,610 - PGA1_c07100 0.38 +0.9 729,624 - PGA1_c07100 0.39 -1.6 729,640 + PGA1_c07100 0.40 +0.8 729,672 - PGA1_c07100 0.41 -0.8 729,697 + PGA1_c07100 0.42 -0.8 729,697 + PGA1_c07100 0.42 -1.6 729,705 - PGA1_c07100 0.42 -0.2 729,705 - PGA1_c07100 0.42 -0.1 729,751 - PGA1_c07100 0.44 +0.0 729,822 + PGA1_c07100 0.47 -0.5 729,906 - PGA1_c07100 0.51 -1.1 729,932 + PGA1_c07100 0.52 -0.6 730,037 + PGA1_c07100 0.56 -0.0 730,085 + PGA1_c07100 0.59 -0.2 730,087 + PGA1_c07100 0.59 -1.4 730,087 + PGA1_c07100 0.59 +0.1 730,087 + PGA1_c07100 0.59 -1.9 730,095 - PGA1_c07100 0.59 +0.9 730,095 - PGA1_c07100 0.59 -0.6 730,095 - PGA1_c07100 0.59 -0.5 730,104 + PGA1_c07100 0.59 -0.9 730,127 + PGA1_c07100 0.60 -0.4 730,135 - PGA1_c07100 0.61 -0.2 730,173 - PGA1_c07100 0.62 -0.9 730,192 + PGA1_c07100 0.63 +0.9 730,219 + PGA1_c07100 0.64 +0.3 730,219 + PGA1_c07100 0.64 -2.5 730,324 + PGA1_c07100 0.69 +0.4 730,332 - PGA1_c07100 0.69 +0.7 730,349 + PGA1_c07100 0.70 -0.1 730,354 + PGA1_c07100 0.70 +0.1 730,357 - PGA1_c07100 0.70 -0.6 730,357 - PGA1_c07100 0.70 -0.4 730,357 - PGA1_c07100 0.70 -0.8 730,357 - PGA1_c07100 0.70 -1.1 730,419 + PGA1_c07100 0.73 -1.8 730,426 - PGA1_c07100 0.73 +0.7 730,452 - PGA1_c07100 0.74 +0.6 730,463 - PGA1_c07100 0.75 +0.4 730,463 - PGA1_c07100 0.75 -0.3 730,478 - PGA1_c07100 0.75 -0.9 730,517 - PGA1_c07100 0.77 +0.6 730,569 - PGA1_c07100 0.79 -0.8 730,623 - PGA1_c07100 0.81 +0.9 730,687 + PGA1_c07100 0.84 +0.7 730,762 + PGA1_c07100 0.87 +0.1 730,826 - PGA1_c07100 0.90 -0.6 730,873 + -0.7 730,876 - +0.4 730,910 - -0.3 730,928 + +0.1 730,936 - -0.7 730,936 - -1.8 730,936 - -0.1 730,961 + -0.9 730,969 - -0.1 731,013 + +0.4 731,013 + -1.5 731,021 - -1.9 731,021 - -0.6 731,021 - +1.0 731,045 - +1.7 731,073 + +0.8 731,073 + +0.6 731,073 + -0.7 731,073 + -0.2 731,073 - +0.5 731,081 - -0.2 731,081 - +0.4 731,210 + +0.9 731,330 - PGA1_c07110 0.14 +0.4 731,353 + PGA1_c07110 0.15 -0.7 731,353 + PGA1_c07110 0.15 -0.4 731,354 + PGA1_c07110 0.15 -1.2 731,354 + PGA1_c07110 0.15 -1.5 731,354 + PGA1_c07110 0.15 -1.6 731,361 - PGA1_c07110 0.16 -0.1 731,362 - PGA1_c07110 0.16 -0.0 731,362 - PGA1_c07110 0.16 -0.2 731,362 - PGA1_c07110 0.16 +1.5 731,362 - PGA1_c07110 0.16 -1.5 731,362 - PGA1_c07110 0.16 +1.1 731,367 + PGA1_c07110 0.16 -1.2 731,435 - PGA1_c07110 0.21 -0.4 731,480 + PGA1_c07110 0.24 -0.6 731,510 + PGA1_c07110 0.26 +0.5 731,524 + PGA1_c07110 0.26 +0.3 731,586 + PGA1_c07110 0.30 -0.6 731,632 - PGA1_c07110 0.33 -0.4 731,638 + PGA1_c07110 0.34 -1.1 731,869 + PGA1_c07110 0.49 -0.6 731,876 + PGA1_c07110 0.49 -0.9 731,876 + PGA1_c07110 0.49 -0.6 731,884 - PGA1_c07110 0.50 -2.5
Or see this region's nucleotide sequence