Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07050

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07040 and PGA1_c07050 are separated by 87 nucleotidesPGA1_c07050 and PGA1_c07060 are separated by 165 nucleotidesPGA1_c07060 and PGA1_c07070 overlap by 4 nucleotides PGA1_c07040: PGA1_c07040 - transcriptional regulator, lysR family, at 724,131 to 725,009 _c07040 PGA1_c07050: PGA1_c07050 - methyltransferase domain-containing protein, at 725,097 to 725,732 _c07050 PGA1_c07060: PGA1_c07060 - YtoQ family protein, at 725,898 to 726,347 _c07060 PGA1_c07070: PGA1_c07070 - acetyltransferase domain-containing protein, at 726,344 to 726,871 _c07070 Position (kb) 725 726Strain fitness (log2 ratio) -2 -1 0 1at 724.160 kb on + strandat 724.160 kb on + strandat 724.160 kb on + strandat 724.168 kb on - strandat 724.168 kb on - strandat 724.168 kb on - strandat 724.168 kb on - strandat 724.235 kb on + strand, within PGA1_c07040at 724.243 kb on - strand, within PGA1_c07040at 724.243 kb on - strand, within PGA1_c07040at 724.244 kb on - strand, within PGA1_c07040at 724.246 kb on + strand, within PGA1_c07040at 724.254 kb on - strand, within PGA1_c07040at 724.277 kb on - strand, within PGA1_c07040at 724.333 kb on - strand, within PGA1_c07040at 724.383 kb on - strand, within PGA1_c07040at 724.416 kb on + strand, within PGA1_c07040at 724.416 kb on + strand, within PGA1_c07040at 724.416 kb on + strand, within PGA1_c07040at 724.416 kb on + strand, within PGA1_c07040at 724.424 kb on - strand, within PGA1_c07040at 724.424 kb on - strand, within PGA1_c07040at 724.424 kb on - strand, within PGA1_c07040at 724.424 kb on - strand, within PGA1_c07040at 724.455 kb on + strand, within PGA1_c07040at 724.494 kb on + strand, within PGA1_c07040at 724.494 kb on + strand, within PGA1_c07040at 724.494 kb on + strand, within PGA1_c07040at 724.494 kb on + strand, within PGA1_c07040at 724.504 kb on + strand, within PGA1_c07040at 724.530 kb on + strand, within PGA1_c07040at 724.564 kb on - strand, within PGA1_c07040at 724.594 kb on + strand, within PGA1_c07040at 724.656 kb on + strand, within PGA1_c07040at 724.675 kb on + strand, within PGA1_c07040at 724.910 kb on - strand, within PGA1_c07040at 724.912 kb on + strand, within PGA1_c07040at 724.915 kb on - strand, within PGA1_c07040at 724.918 kb on + strand, within PGA1_c07040at 724.922 kb on + strandat 724.922 kb on + strandat 724.922 kb on + strandat 724.930 kb on - strandat 724.930 kb on - strandat 724.937 kb on + strandat 724.937 kb on + strandat 724.941 kb on + strandat 724.947 kb on + strandat 724.978 kb on + strandat 725.147 kb on + strandat 725.192 kb on + strand, within PGA1_c07050at 725.197 kb on + strand, within PGA1_c07050at 725.200 kb on - strand, within PGA1_c07050at 725.200 kb on - strand, within PGA1_c07050at 725.200 kb on - strand, within PGA1_c07050at 725.205 kb on - strand, within PGA1_c07050at 725.211 kb on - strand, within PGA1_c07050at 725.219 kb on - strand, within PGA1_c07050at 725.275 kb on - strand, within PGA1_c07050at 725.325 kb on + strand, within PGA1_c07050at 725.330 kb on + strand, within PGA1_c07050at 725.338 kb on - strand, within PGA1_c07050at 725.373 kb on - strand, within PGA1_c07050at 725.390 kb on - strand, within PGA1_c07050at 725.422 kb on + strand, within PGA1_c07050at 725.430 kb on - strand, within PGA1_c07050at 725.489 kb on - strand, within PGA1_c07050at 725.532 kb on + strand, within PGA1_c07050at 725.597 kb on + strand, within PGA1_c07050at 725.751 kb on + strandat 725.769 kb on - strandat 725.769 kb on - strandat 725.793 kb on - strandat 725.802 kb on + strandat 725.836 kb on + strandat 725.867 kb on + strandat 725.954 kb on - strand, within PGA1_c07060at 725.984 kb on + strand, within PGA1_c07060at 725.992 kb on - strand, within PGA1_c07060at 726.086 kb on + strand, within PGA1_c07060at 726.089 kb on - strand, within PGA1_c07060at 726.094 kb on - strand, within PGA1_c07060at 726.111 kb on - strand, within PGA1_c07060at 726.154 kb on + strand, within PGA1_c07060at 726.201 kb on - strand, within PGA1_c07060at 726.217 kb on - strand, within PGA1_c07060at 726.224 kb on + strand, within PGA1_c07060at 726.232 kb on - strand, within PGA1_c07060at 726.440 kb on - strand, within PGA1_c07070at 726.448 kb on + strand, within PGA1_c07070at 726.479 kb on - strand, within PGA1_c07070at 726.481 kb on + strand, within PGA1_c07070at 726.481 kb on + strand, within PGA1_c07070at 726.521 kb on + strand, within PGA1_c07070at 726.549 kb on + strand, within PGA1_c07070at 726.549 kb on + strand, within PGA1_c07070at 726.647 kb on + strand, within PGA1_c07070at 726.668 kb on + strand, within PGA1_c07070at 726.674 kb on + strand, within PGA1_c07070at 726.698 kb on - strand, within PGA1_c07070

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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724,160 + -0.6
724,160 + -0.2
724,160 + +1.1
724,168 - -0.5
724,168 - +1.4
724,168 - -0.3
724,168 - +0.0
724,235 + PGA1_c07040 0.12 +0.0
724,243 - PGA1_c07040 0.13 -0.3
724,243 - PGA1_c07040 0.13 +1.7
724,244 - PGA1_c07040 0.13 -2.6
724,246 + PGA1_c07040 0.13 -1.6
724,254 - PGA1_c07040 0.14 +0.8
724,277 - PGA1_c07040 0.17 +1.7
724,333 - PGA1_c07040 0.23 +1.3
724,383 - PGA1_c07040 0.29 +0.7
724,416 + PGA1_c07040 0.32 +1.0
724,416 + PGA1_c07040 0.32 -1.4
724,416 + PGA1_c07040 0.32 -1.2
724,416 + PGA1_c07040 0.32 -0.6
724,424 - PGA1_c07040 0.33 -0.1
724,424 - PGA1_c07040 0.33 -2.2
724,424 - PGA1_c07040 0.33 +1.4
724,424 - PGA1_c07040 0.33 -1.7
724,455 + PGA1_c07040 0.37 +0.0
724,494 + PGA1_c07040 0.41 -0.4
724,494 + PGA1_c07040 0.41 +0.0
724,494 + PGA1_c07040 0.41 +0.2
724,494 + PGA1_c07040 0.41 +0.7
724,504 + PGA1_c07040 0.42 -0.3
724,530 + PGA1_c07040 0.45 -0.0
724,564 - PGA1_c07040 0.49 -1.0
724,594 + PGA1_c07040 0.53 +0.6
724,656 + PGA1_c07040 0.60 -0.7
724,675 + PGA1_c07040 0.62 +0.3
724,910 - PGA1_c07040 0.89 -0.5
724,912 + PGA1_c07040 0.89 -0.1
724,915 - PGA1_c07040 0.89 -0.5
724,918 + PGA1_c07040 0.90 +0.7
724,922 + +1.3
724,922 + -0.1
724,922 + -0.7
724,930 - -0.6
724,930 - -0.1
724,937 + +0.1
724,937 + -0.0
724,941 + +0.7
724,947 + +0.7
724,978 + -0.5
725,147 + +0.7
725,192 + PGA1_c07050 0.15 -0.4
725,197 + PGA1_c07050 0.16 +0.3
725,200 - PGA1_c07050 0.16 -1.6
725,200 - PGA1_c07050 0.16 -0.5
725,200 - PGA1_c07050 0.16 -1.1
725,205 - PGA1_c07050 0.17 +0.4
725,211 - PGA1_c07050 0.18 -0.3
725,219 - PGA1_c07050 0.19 -1.5
725,275 - PGA1_c07050 0.28 -0.6
725,325 + PGA1_c07050 0.36 +1.1
725,330 + PGA1_c07050 0.37 -1.2
725,338 - PGA1_c07050 0.38 -2.7
725,373 - PGA1_c07050 0.43 -1.7
725,390 - PGA1_c07050 0.46 +0.4
725,422 + PGA1_c07050 0.51 -0.1
725,430 - PGA1_c07050 0.52 -0.7
725,489 - PGA1_c07050 0.62 +0.3
725,532 + PGA1_c07050 0.68 -1.3
725,597 + PGA1_c07050 0.79 -0.7
725,751 + +0.3
725,769 - +0.4
725,769 - -2.0
725,793 - -1.4
725,802 + +0.5
725,836 + -0.8
725,867 + +1.7
725,954 - PGA1_c07060 0.12 -1.1
725,984 + PGA1_c07060 0.19 -0.5
725,992 - PGA1_c07060 0.21 +1.2
726,086 + PGA1_c07060 0.42 -0.8
726,089 - PGA1_c07060 0.42 -1.9
726,094 - PGA1_c07060 0.44 +1.4
726,111 - PGA1_c07060 0.47 -1.4
726,154 + PGA1_c07060 0.57 +1.3
726,201 - PGA1_c07060 0.67 +0.1
726,217 - PGA1_c07060 0.71 -0.9
726,224 + PGA1_c07060 0.72 +0.4
726,232 - PGA1_c07060 0.74 -0.1
726,440 - PGA1_c07070 0.18 -2.3
726,448 + PGA1_c07070 0.20 +0.3
726,479 - PGA1_c07070 0.26 +0.0
726,481 + PGA1_c07070 0.26 -0.9
726,481 + PGA1_c07070 0.26 -0.0
726,521 + PGA1_c07070 0.34 +0.1
726,549 + PGA1_c07070 0.39 +0.4
726,549 + PGA1_c07070 0.39 +1.3
726,647 + PGA1_c07070 0.57 +0.5
726,668 + PGA1_c07070 0.61 -1.5
726,674 + PGA1_c07070 0.62 -0.3
726,698 - PGA1_c07070 0.67 -0.6

Or see this region's nucleotide sequence