Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06730

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06720 and PGA1_c06730 are separated by 406 nucleotidesPGA1_c06730 and PGA1_c06740 are separated by 32 nucleotidesPGA1_c06740 and PGA1_c06750 are separated by 123 nucleotides PGA1_c06720: PGA1_c06720 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 690,052 to 690,477 _c06720 PGA1_c06730: PGA1_c06730 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 690,884 to 692,806 _c06730 PGA1_c06740: PGA1_c06740 - octanoyltransferase LipB, at 692,839 to 693,510 _c06740 PGA1_c06750: PGA1_c06750 - Putative peptidoglycan binding domain., at 693,634 to 695,295 _c06750 Position (kb) 690 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 689.892 kb on + strandat 689.900 kb on - strandat 690.033 kb on + strandat 690.041 kb on - strandat 690.041 kb on - strandat 690.110 kb on - strand, within PGA1_c06720at 690.118 kb on + strand, within PGA1_c06720at 690.118 kb on + strand, within PGA1_c06720at 690.126 kb on - strand, within PGA1_c06720at 690.126 kb on - strand, within PGA1_c06720at 690.126 kb on - strand, within PGA1_c06720at 690.126 kb on - strand, within PGA1_c06720at 690.133 kb on - strand, within PGA1_c06720at 690.136 kb on + strand, within PGA1_c06720at 690.138 kb on - strand, within PGA1_c06720at 690.144 kb on - strand, within PGA1_c06720at 690.173 kb on + strand, within PGA1_c06720at 690.173 kb on + strand, within PGA1_c06720at 690.173 kb on + strand, within PGA1_c06720at 690.226 kb on + strand, within PGA1_c06720at 690.252 kb on - strand, within PGA1_c06720at 690.264 kb on - strand, within PGA1_c06720at 690.272 kb on + strand, within PGA1_c06720at 690.300 kb on + strand, within PGA1_c06720at 690.327 kb on + strand, within PGA1_c06720at 690.327 kb on + strand, within PGA1_c06720at 690.335 kb on - strand, within PGA1_c06720at 690.335 kb on - strand, within PGA1_c06720at 690.464 kb on - strandat 690.476 kb on + strandat 690.493 kb on + strandat 690.493 kb on + strandat 690.602 kb on - strandat 690.655 kb on + strandat 690.663 kb on - strandat 690.756 kb on + strandat 690.769 kb on - strandat 690.788 kb on + strandat 690.806 kb on - strandat 690.826 kb on - strandat 690.869 kb on - strandat 690.876 kb on + strandat 690.886 kb on + strandat 690.894 kb on - strandat 690.901 kb on + strandat 690.909 kb on - strandat 690.933 kb on + strandat 690.993 kb on - strandat 691.063 kb on - strandat 691.093 kb on + strand, within PGA1_c06730at 691.111 kb on - strand, within PGA1_c06730at 691.138 kb on - strand, within PGA1_c06730at 691.164 kb on - strand, within PGA1_c06730at 691.175 kb on + strand, within PGA1_c06730at 691.175 kb on + strand, within PGA1_c06730at 691.175 kb on + strand, within PGA1_c06730at 691.175 kb on + strand, within PGA1_c06730at 691.183 kb on - strand, within PGA1_c06730at 691.300 kb on + strand, within PGA1_c06730at 691.331 kb on + strand, within PGA1_c06730at 691.390 kb on + strand, within PGA1_c06730at 691.390 kb on + strand, within PGA1_c06730at 691.398 kb on - strand, within PGA1_c06730at 691.398 kb on - strand, within PGA1_c06730at 691.455 kb on - strand, within PGA1_c06730at 691.462 kb on + strand, within PGA1_c06730at 691.472 kb on + strand, within PGA1_c06730at 691.472 kb on + strand, within PGA1_c06730at 691.472 kb on + strand, within PGA1_c06730at 691.472 kb on + strand, within PGA1_c06730at 691.480 kb on - strand, within PGA1_c06730at 691.480 kb on - strand, within PGA1_c06730at 691.502 kb on + strand, within PGA1_c06730at 691.562 kb on + strand, within PGA1_c06730at 691.562 kb on + strand, within PGA1_c06730at 691.562 kb on + strand, within PGA1_c06730at 691.570 kb on - strand, within PGA1_c06730at 691.584 kb on - strand, within PGA1_c06730at 691.610 kb on - strand, within PGA1_c06730at 691.648 kb on - strand, within PGA1_c06730at 691.649 kb on + strand, within PGA1_c06730at 691.727 kb on + strand, within PGA1_c06730at 691.735 kb on - strand, within PGA1_c06730at 691.769 kb on + strand, within PGA1_c06730at 691.782 kb on + strand, within PGA1_c06730at 691.796 kb on + strand, within PGA1_c06730at 691.804 kb on - strand, within PGA1_c06730at 691.827 kb on - strand, within PGA1_c06730at 691.879 kb on - strand, within PGA1_c06730at 691.886 kb on + strand, within PGA1_c06730at 691.888 kb on - strand, within PGA1_c06730at 692.033 kb on + strand, within PGA1_c06730at 692.040 kb on - strand, within PGA1_c06730at 692.041 kb on - strand, within PGA1_c06730at 692.067 kb on + strand, within PGA1_c06730at 692.166 kb on - strand, within PGA1_c06730at 692.191 kb on - strand, within PGA1_c06730at 692.192 kb on - strand, within PGA1_c06730at 692.302 kb on + strand, within PGA1_c06730at 692.307 kb on + strand, within PGA1_c06730at 692.307 kb on + strand, within PGA1_c06730at 692.307 kb on + strand, within PGA1_c06730at 692.307 kb on + strand, within PGA1_c06730at 692.312 kb on + strand, within PGA1_c06730at 692.315 kb on - strand, within PGA1_c06730at 692.315 kb on - strand, within PGA1_c06730at 692.315 kb on - strand, within PGA1_c06730at 692.315 kb on - strand, within PGA1_c06730at 692.315 kb on - strand, within PGA1_c06730at 692.317 kb on + strand, within PGA1_c06730at 692.320 kb on - strand, within PGA1_c06730at 692.363 kb on + strand, within PGA1_c06730at 692.363 kb on + strand, within PGA1_c06730at 692.371 kb on - strand, within PGA1_c06730at 692.371 kb on - strand, within PGA1_c06730at 692.371 kb on - strand, within PGA1_c06730at 692.371 kb on - strand, within PGA1_c06730at 692.378 kb on + strand, within PGA1_c06730at 692.378 kb on + strand, within PGA1_c06730at 692.426 kb on + strand, within PGA1_c06730at 692.435 kb on - strand, within PGA1_c06730at 692.572 kb on - strand, within PGA1_c06730at 692.622 kb on + strandat 692.622 kb on + strandat 692.622 kb on + strandat 692.630 kb on - strandat 692.630 kb on - strandat 692.630 kb on - strandat 692.632 kb on + strandat 692.655 kb on + strandat 692.660 kb on + strandat 692.663 kb on - strandat 692.663 kb on - strandat 692.665 kb on - strandat 692.694 kb on + strandat 692.725 kb on + strandat 692.738 kb on - strandat 692.740 kb on + strandat 692.806 kb on + strandat 692.806 kb on + strandat 692.806 kb on + strandat 692.836 kb on + strandat 692.844 kb on - strandat 692.857 kb on - strandat 692.862 kb on - strandat 693.539 kb on + strandat 693.544 kb on + strandat 693.544 kb on + strandat 693.544 kb on + strandat 693.544 kb on + strandat 693.552 kb on - strandat 693.552 kb on - strandat 693.552 kb on - strandat 693.594 kb on + strandat 693.673 kb on + strandat 693.676 kb on - strandat 693.676 kb on - strandat 693.676 kb on - strandat 693.681 kb on - strandat 693.683 kb on + strandat 693.683 kb on + strandat 693.714 kb on + strandat 693.714 kb on + strandat 693.749 kb on + strandat 693.757 kb on - strandat 693.769 kb on + strandat 693.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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689,892 + -0.1
689,900 - +2.3
690,033 + -0.0
690,041 - +0.6
690,041 - -0.6
690,110 - PGA1_c06720 0.14 -0.6
690,118 + PGA1_c06720 0.15 -1.6
690,118 + PGA1_c06720 0.15 -2.8
690,126 - PGA1_c06720 0.17 -0.8
690,126 - PGA1_c06720 0.17 +1.4
690,126 - PGA1_c06720 0.17 -2.6
690,126 - PGA1_c06720 0.17 +2.7
690,133 - PGA1_c06720 0.19 +0.9
690,136 + PGA1_c06720 0.20 +3.0
690,138 - PGA1_c06720 0.20 +2.0
690,144 - PGA1_c06720 0.22 +0.5
690,173 + PGA1_c06720 0.28 +0.8
690,173 + PGA1_c06720 0.28 +1.2
690,173 + PGA1_c06720 0.28 -0.4
690,226 + PGA1_c06720 0.41 +2.0
690,252 - PGA1_c06720 0.47 -0.6
690,264 - PGA1_c06720 0.50 +0.9
690,272 + PGA1_c06720 0.52 +0.3
690,300 + PGA1_c06720 0.58 +2.6
690,327 + PGA1_c06720 0.65 -0.8
690,327 + PGA1_c06720 0.65 +1.1
690,335 - PGA1_c06720 0.66 +0.1
690,335 - PGA1_c06720 0.66 -0.6
690,464 - +0.6
690,476 + +0.9
690,493 + +0.4
690,493 + +1.6
690,602 - -0.3
690,655 + +1.2
690,663 - -0.6
690,756 + +1.0
690,769 - +0.7
690,788 + -0.1
690,806 - -0.6
690,826 - +1.4
690,869 - -1.9
690,876 + -0.6
690,886 + -0.3
690,894 - -0.1
690,901 + +1.0
690,909 - -0.2
690,933 + +1.2
690,993 - -0.1
691,063 - +0.4
691,093 + PGA1_c06730 0.11 +0.7
691,111 - PGA1_c06730 0.12 +2.0
691,138 - PGA1_c06730 0.13 +1.0
691,164 - PGA1_c06730 0.15 +0.6
691,175 + PGA1_c06730 0.15 +1.1
691,175 + PGA1_c06730 0.15 -0.6
691,175 + PGA1_c06730 0.15 +0.4
691,175 + PGA1_c06730 0.15 +0.4
691,183 - PGA1_c06730 0.16 +0.5
691,300 + PGA1_c06730 0.22 -0.1
691,331 + PGA1_c06730 0.23 +0.9
691,390 + PGA1_c06730 0.26 -0.1
691,390 + PGA1_c06730 0.26 +0.4
691,398 - PGA1_c06730 0.27 +0.9
691,398 - PGA1_c06730 0.27 +2.0
691,455 - PGA1_c06730 0.30 -0.6
691,462 + PGA1_c06730 0.30 +0.3
691,472 + PGA1_c06730 0.31 +1.1
691,472 + PGA1_c06730 0.31 +0.6
691,472 + PGA1_c06730 0.31 +2.1
691,472 + PGA1_c06730 0.31 -0.8
691,480 - PGA1_c06730 0.31 +0.4
691,480 - PGA1_c06730 0.31 -0.1
691,502 + PGA1_c06730 0.32 +1.0
691,562 + PGA1_c06730 0.35 -0.3
691,562 + PGA1_c06730 0.35 +0.8
691,562 + PGA1_c06730 0.35 -0.3
691,570 - PGA1_c06730 0.36 +0.7
691,584 - PGA1_c06730 0.36 -1.9
691,610 - PGA1_c06730 0.38 +0.1
691,648 - PGA1_c06730 0.40 +0.6
691,649 + PGA1_c06730 0.40 +1.6
691,727 + PGA1_c06730 0.44 -1.9
691,735 - PGA1_c06730 0.44 +0.4
691,769 + PGA1_c06730 0.46 +0.8
691,782 + PGA1_c06730 0.47 -1.2
691,796 + PGA1_c06730 0.47 +1.6
691,804 - PGA1_c06730 0.48 +0.2
691,827 - PGA1_c06730 0.49 +2.0
691,879 - PGA1_c06730 0.52 -0.1
691,886 + PGA1_c06730 0.52 +0.5
691,888 - PGA1_c06730 0.52 +1.0
692,033 + PGA1_c06730 0.60 +0.6
692,040 - PGA1_c06730 0.60 +1.1
692,041 - PGA1_c06730 0.60 -0.4
692,067 + PGA1_c06730 0.62 +2.7
692,166 - PGA1_c06730 0.67 -0.0
692,191 - PGA1_c06730 0.68 +0.6
692,192 - PGA1_c06730 0.68 +0.4
692,302 + PGA1_c06730 0.74 -1.1
692,307 + PGA1_c06730 0.74 +0.4
692,307 + PGA1_c06730 0.74 +0.4
692,307 + PGA1_c06730 0.74 -0.4
692,307 + PGA1_c06730 0.74 +1.1
692,312 + PGA1_c06730 0.74 +0.7
692,315 - PGA1_c06730 0.74 +0.2
692,315 - PGA1_c06730 0.74 +0.7
692,315 - PGA1_c06730 0.74 -0.2
692,315 - PGA1_c06730 0.74 +0.4
692,315 - PGA1_c06730 0.74 -0.2
692,317 + PGA1_c06730 0.75 +1.8
692,320 - PGA1_c06730 0.75 +1.3
692,363 + PGA1_c06730 0.77 -1.6
692,363 + PGA1_c06730 0.77 -0.1
692,371 - PGA1_c06730 0.77 +0.4
692,371 - PGA1_c06730 0.77 -1.8
692,371 - PGA1_c06730 0.77 -0.3
692,371 - PGA1_c06730 0.77 -0.0
692,378 + PGA1_c06730 0.78 -0.5
692,378 + PGA1_c06730 0.78 -0.8
692,426 + PGA1_c06730 0.80 -3.1
692,435 - PGA1_c06730 0.81 +1.4
692,572 - PGA1_c06730 0.88 +1.6
692,622 + -2.2
692,622 + +0.1
692,622 + -0.0
692,630 - +0.9
692,630 - +1.2
692,630 - -0.6
692,632 + -1.2
692,655 + -0.6
692,660 + +1.0
692,663 - -1.4
692,663 - +1.2
692,665 - +1.2
692,694 + +1.4
692,725 + -0.6
692,738 - +1.3
692,740 + -1.2
692,806 + +2.4
692,806 + -0.9
692,806 + -0.3
692,836 + +2.7
692,844 - +0.1
692,857 - -0.5
692,862 - +0.6
693,539 + -0.6
693,544 + +0.4
693,544 + +1.4
693,544 + +0.2
693,544 + +1.0
693,552 - +2.0
693,552 - +0.5
693,552 - +0.9
693,594 + +1.0
693,673 + +0.8
693,676 - -1.2
693,676 - -2.2
693,676 - -0.2
693,681 - -0.6
693,683 + -0.2
693,683 + +0.9
693,714 + -1.9
693,714 + -0.3
693,749 + +1.4
693,757 - +0.1
693,769 + +1.4
693,777 - +0.0

Or see this region's nucleotide sequence