Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05070 and PGA1_c05080 overlap by 1 nucleotides PGA1_c05080 and PGA1_c05090 are separated by 425 nucleotides
PGA1_c05070: PGA1_c05070 - putative pyridoxal-phosphate-dependent aminotransferase, at 499,811 to 500,908
_c05070
PGA1_c05080: PGA1_c05080 - WxcM-like, C-terminal., at 500,908 to 501,342
_c05080
PGA1_c05090: PGA1_c05090 - putative glycosyl transferase, at 501,768 to 502,712
_c05090
Position (kb) 500
501
502 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 499.972 kb on + strand, within PGA1_c05070 at 499.977 kb on + strand, within PGA1_c05070 at 499.977 kb on + strand, within PGA1_c05070 at 499.982 kb on + strand, within PGA1_c05070 at 499.985 kb on - strand, within PGA1_c05070 at 500.040 kb on + strand, within PGA1_c05070 at 500.104 kb on + strand, within PGA1_c05070 at 500.114 kb on + strand, within PGA1_c05070 at 500.176 kb on - strand, within PGA1_c05070 at 500.211 kb on + strand, within PGA1_c05070 at 500.225 kb on + strand, within PGA1_c05070 at 500.225 kb on + strand, within PGA1_c05070 at 500.293 kb on + strand, within PGA1_c05070 at 500.293 kb on + strand, within PGA1_c05070 at 500.359 kb on + strand, within PGA1_c05070 at 500.367 kb on - strand, within PGA1_c05070 at 500.449 kb on + strand, within PGA1_c05070 at 500.449 kb on + strand, within PGA1_c05070 at 500.457 kb on - strand, within PGA1_c05070 at 500.520 kb on + strand, within PGA1_c05070 at 500.543 kb on + strand, within PGA1_c05070 at 500.589 kb on + strand, within PGA1_c05070 at 500.611 kb on + strand, within PGA1_c05070 at 500.622 kb on + strand, within PGA1_c05070 at 500.631 kb on + strand, within PGA1_c05070 at 500.640 kb on - strand, within PGA1_c05070 at 500.684 kb on - strand, within PGA1_c05070 at 500.713 kb on + strand, within PGA1_c05070 at 500.740 kb on + strand, within PGA1_c05070 at 500.748 kb on - strand, within PGA1_c05070 at 500.748 kb on - strand, within PGA1_c05070 at 500.750 kb on + strand, within PGA1_c05070 at 500.787 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.797 kb on + strand, within PGA1_c05070 at 500.805 kb on - strand at 500.813 kb on + strand at 500.831 kb on - strand at 500.831 kb on - strand at 500.834 kb on + strand at 500.880 kb on + strand at 500.888 kb on - strand at 500.910 kb on + strand at 500.958 kb on - strand, within PGA1_c05080 at 500.958 kb on - strand, within PGA1_c05080 at 500.973 kb on - strand, within PGA1_c05080 at 500.980 kb on + strand, within PGA1_c05080 at 500.981 kb on + strand, within PGA1_c05080 at 500.989 kb on + strand, within PGA1_c05080 at 500.995 kb on - strand, within PGA1_c05080 at 501.095 kb on + strand, within PGA1_c05080 at 501.100 kb on + strand, within PGA1_c05080 at 501.100 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.111 kb on + strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.119 kb on - strand, within PGA1_c05080 at 501.127 kb on - strand, within PGA1_c05080 at 501.145 kb on + strand, within PGA1_c05080 at 501.152 kb on + strand, within PGA1_c05080 at 501.152 kb on - strand, within PGA1_c05080 at 501.152 kb on - strand, within PGA1_c05080 at 501.153 kb on - strand, within PGA1_c05080 at 501.160 kb on - strand, within PGA1_c05080 at 501.162 kb on - strand, within PGA1_c05080 at 501.179 kb on + strand, within PGA1_c05080 at 501.203 kb on + strand, within PGA1_c05080 at 501.232 kb on - strand, within PGA1_c05080 at 501.259 kb on - strand, within PGA1_c05080 at 501.318 kb on + strand at 501.360 kb on - strand at 501.370 kb on - strand at 501.370 kb on - strand at 501.386 kb on + strand at 501.386 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.388 kb on + strand at 501.391 kb on - strand at 501.394 kb on - strand at 501.395 kb on + strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.396 kb on - strand at 501.405 kb on + strand at 501.413 kb on - strand at 501.418 kb on - strand at 501.439 kb on - strand at 501.466 kb on + strand at 501.476 kb on - strand at 501.486 kb on - strand at 501.494 kb on - strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.496 kb on + strand at 501.504 kb on - strand at 501.522 kb on + strand at 501.522 kb on + strand at 501.552 kb on + strand at 501.552 kb on + strand at 501.552 kb on + strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.560 kb on - strand at 501.567 kb on - strand at 501.604 kb on + strand at 501.629 kb on - strand at 501.630 kb on + strand at 501.641 kb on - strand at 501.646 kb on + strand at 501.647 kb on - strand at 501.654 kb on - strand at 501.662 kb on + strand at 501.670 kb on - strand at 501.670 kb on - strand at 501.699 kb on + strand at 501.699 kb on - strand at 501.747 kb on + strand at 501.760 kb on - strand at 501.792 kb on - strand at 501.792 kb on - strand at 501.802 kb on + strand at 501.810 kb on + strand at 501.810 kb on + strand at 501.810 kb on + strand at 501.810 kb on - strand at 501.810 kb on - strand at 501.818 kb on - strand at 501.818 kb on - strand at 501.828 kb on - strand at 501.892 kb on + strand, within PGA1_c05090 at 501.899 kb on + strand, within PGA1_c05090 at 501.938 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.945 kb on + strand, within PGA1_c05090 at 501.953 kb on - strand, within PGA1_c05090 at 501.963 kb on - strand, within PGA1_c05090 at 502.012 kb on + strand, within PGA1_c05090 at 502.064 kb on - strand, within PGA1_c05090 at 502.066 kb on - strand, within PGA1_c05090 at 502.068 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.090 kb on + strand, within PGA1_c05090 at 502.098 kb on - strand, within PGA1_c05090 at 502.098 kb on - strand, within PGA1_c05090 at 502.127 kb on - strand, within PGA1_c05090 at 502.285 kb on + strand, within PGA1_c05090 at 502.285 kb on + strand, within PGA1_c05090 at 502.286 kb on + strand, within PGA1_c05090 at 502.291 kb on + strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090 at 502.294 kb on - strand, within PGA1_c05090
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 499,972 + PGA1_c05070 0.15 +1.5 499,977 + PGA1_c05070 0.15 -0.8 499,977 + PGA1_c05070 0.15 -1.6 499,982 + PGA1_c05070 0.16 +2.0 499,985 - PGA1_c05070 0.16 -0.9 500,040 + PGA1_c05070 0.21 -1.4 500,104 + PGA1_c05070 0.27 -0.1 500,114 + PGA1_c05070 0.28 -0.8 500,176 - PGA1_c05070 0.33 -3.8 500,211 + PGA1_c05070 0.36 -1.1 500,225 + PGA1_c05070 0.38 -1.4 500,225 + PGA1_c05070 0.38 -2.1 500,293 + PGA1_c05070 0.44 +0.4 500,293 + PGA1_c05070 0.44 -0.2 500,359 + PGA1_c05070 0.50 -1.1 500,367 - PGA1_c05070 0.51 -0.8 500,449 + PGA1_c05070 0.58 -0.4 500,449 + PGA1_c05070 0.58 +0.5 500,457 - PGA1_c05070 0.59 -1.2 500,520 + PGA1_c05070 0.65 -1.8 500,543 + PGA1_c05070 0.67 -1.7 500,589 + PGA1_c05070 0.71 -1.2 500,611 + PGA1_c05070 0.73 -2.5 500,622 + PGA1_c05070 0.74 -1.0 500,631 + PGA1_c05070 0.75 -1.1 500,640 - PGA1_c05070 0.76 -1.9 500,684 - PGA1_c05070 0.80 -0.8 500,713 + PGA1_c05070 0.82 +0.0 500,740 + PGA1_c05070 0.85 -0.9 500,748 - PGA1_c05070 0.85 +0.6 500,748 - PGA1_c05070 0.85 -0.6 500,750 + PGA1_c05070 0.86 +0.1 500,787 + PGA1_c05070 0.89 -1.1 500,797 + PGA1_c05070 0.90 +0.0 500,797 + PGA1_c05070 0.90 -2.3 500,797 + PGA1_c05070 0.90 -0.9 500,805 - -1.7 500,813 + -1.5 500,831 - -0.2 500,831 - -0.6 500,834 + -1.1 500,880 + +1.8 500,888 - -0.9 500,910 + -1.5 500,958 - PGA1_c05080 0.11 -0.8 500,958 - PGA1_c05080 0.11 -1.8 500,973 - PGA1_c05080 0.15 +0.2 500,980 + PGA1_c05080 0.17 +0.4 500,981 + PGA1_c05080 0.17 -2.7 500,989 + PGA1_c05080 0.19 -1.0 500,995 - PGA1_c05080 0.20 +0.2 501,095 + PGA1_c05080 0.43 -1.1 501,100 + PGA1_c05080 0.44 -1.2 501,100 + PGA1_c05080 0.44 -0.5 501,111 + PGA1_c05080 0.47 +1.3 501,111 + PGA1_c05080 0.47 -0.5 501,111 + PGA1_c05080 0.47 -1.1 501,111 + PGA1_c05080 0.47 -0.9 501,111 + PGA1_c05080 0.47 -0.5 501,111 + PGA1_c05080 0.47 -0.3 501,111 + PGA1_c05080 0.47 -1.8 501,111 + PGA1_c05080 0.47 -0.0 501,119 - PGA1_c05080 0.49 -0.0 501,119 - PGA1_c05080 0.49 -0.2 501,119 - PGA1_c05080 0.49 -1.3 501,119 - PGA1_c05080 0.49 -1.3 501,119 - PGA1_c05080 0.49 -0.2 501,119 - PGA1_c05080 0.49 -0.4 501,119 - PGA1_c05080 0.49 -1.8 501,127 - PGA1_c05080 0.50 -2.3 501,145 + PGA1_c05080 0.54 -2.8 501,152 + PGA1_c05080 0.56 -0.5 501,152 - PGA1_c05080 0.56 -0.0 501,152 - PGA1_c05080 0.56 -2.6 501,153 - PGA1_c05080 0.56 -0.9 501,160 - PGA1_c05080 0.58 -1.1 501,162 - PGA1_c05080 0.58 -3.5 501,179 + PGA1_c05080 0.62 +0.4 501,203 + PGA1_c05080 0.68 +0.2 501,232 - PGA1_c05080 0.74 -0.7 501,259 - PGA1_c05080 0.81 +0.8 501,318 + -0.2 501,360 - -0.1 501,370 - -1.7 501,370 - -0.6 501,386 + -1.7 501,386 + +0.3 501,388 + -0.1 501,388 + -1.0 501,388 + +0.3 501,388 + -2.0 501,388 + -0.4 501,388 + -0.7 501,388 + +1.2 501,388 + -1.5 501,388 + -1.2 501,388 + +0.5 501,391 - -0.1 501,394 - +0.2 501,395 + +0.8 501,396 - -0.6 501,396 - +0.2 501,396 - -0.9 501,396 - -0.7 501,396 - -0.7 501,396 - -0.8 501,396 - -0.8 501,396 - +0.3 501,405 + -1.3 501,413 - -0.1 501,418 - -1.2 501,439 - -1.8 501,466 + -1.7 501,476 - +1.4 501,486 - +1.0 501,494 - +0.4 501,496 + -0.5 501,496 + +1.2 501,496 + -0.2 501,496 + -0.9 501,496 + -0.4 501,504 - -0.5 501,522 + -1.6 501,522 + -1.0 501,552 + +0.9 501,552 + -1.9 501,552 + -0.7 501,560 - -1.0 501,560 - -0.1 501,560 - +0.1 501,560 - -0.4 501,560 - -1.8 501,560 - -0.2 501,560 - -0.5 501,560 - -1.3 501,567 - -0.7 501,604 + -1.4 501,629 - -0.1 501,630 + +1.0 501,641 - -0.8 501,646 + +0.1 501,647 - -0.5 501,654 - +1.3 501,662 + -0.1 501,670 - +0.4 501,670 - -0.8 501,699 + -0.4 501,699 - +0.8 501,747 + +0.4 501,760 - +0.6 501,792 - -1.1 501,792 - -0.8 501,802 + +0.0 501,810 + -2.0 501,810 + +0.2 501,810 + -0.3 501,810 - -1.1 501,810 - -1.1 501,818 - -3.2 501,818 - +0.3 501,828 - -1.1 501,892 + PGA1_c05090 0.13 +1.1 501,899 + PGA1_c05090 0.14 -0.0 501,938 + PGA1_c05090 0.18 -0.9 501,945 + PGA1_c05090 0.19 -1.7 501,945 + PGA1_c05090 0.19 -0.1 501,945 + PGA1_c05090 0.19 -0.4 501,953 - PGA1_c05090 0.20 +0.1 501,963 - PGA1_c05090 0.21 -2.3 502,012 + PGA1_c05090 0.26 -3.2 502,064 - PGA1_c05090 0.31 -1.7 502,066 - PGA1_c05090 0.32 +0.8 502,068 + PGA1_c05090 0.32 -0.7 502,090 + PGA1_c05090 0.34 +0.0 502,090 + PGA1_c05090 0.34 -0.2 502,090 + PGA1_c05090 0.34 -0.9 502,090 + PGA1_c05090 0.34 -0.1 502,090 + PGA1_c05090 0.34 -0.3 502,098 - PGA1_c05090 0.35 -0.7 502,098 - PGA1_c05090 0.35 +0.8 502,127 - PGA1_c05090 0.38 +0.8 502,285 + PGA1_c05090 0.55 -0.8 502,285 + PGA1_c05090 0.55 -1.6 502,286 + PGA1_c05090 0.55 -1.5 502,291 + PGA1_c05090 0.55 +0.3 502,294 - PGA1_c05090 0.56 -0.7 502,294 - PGA1_c05090 0.56 +1.5 502,294 - PGA1_c05090 0.56 +0.8
Or see this region's nucleotide sequence