Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35900

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,756,911	+				-0.1
3,756,919	+				-0.2
3,756,945	+				-0.2
3,756,974	-				-3.0
3,756,974	-				-0.5
3,756,974	-				+0.5
3,756,974	-				-1.1
3,757,033	+				-0.6
3,757,033	+				-1.6
3,757,033	+				+0.2
3,757,033	+				+0.4
3,757,033	+				-0.9
3,757,033	+				-0.6
3,757,041	-				-0.6
3,757,041	-				+0.4
3,757,041	-				-0.5
3,757,041	-				-0.9
3,757,047	+				+1.1
3,757,057	+				+0.0
3,757,057	+				-0.2
3,757,057	+				+0.4
3,757,057	+				-1.9
3,757,057	+				+0.6
3,757,062	+				-0.8
3,757,065	-				+0.1
3,757,065	-				+0.4
3,757,065	-				+1.3
3,757,065	-				-1.1
3,757,067	+				-1.2
3,757,068	+				-0.9
3,757,069	+				+0.3
3,757,070	-				-0.2
3,757,076	-				-1.6
3,757,076	-				-0.1
3,757,076	-				+0.8
3,757,086	-				-0.6
3,757,135	-				-0.4
3,757,153	-				+0.5
3,757,153	-				-0.1
3,757,190	+		PGA1_c35880	0.17	-0.8
3,757,198	-		PGA1_c35880	0.19	-1.9
3,757,208	-		PGA1_c35880	0.22	+0.3
3,757,221	+		PGA1_c35880	0.26	-0.6
3,757,229	-		PGA1_c35880	0.28	-1.5
3,757,267	+		PGA1_c35880	0.39	-2.0
3,757,272	+		PGA1_c35880	0.40	-0.2
3,757,272	+		PGA1_c35880	0.40	-1.4
3,757,280	+		PGA1_c35880	0.42	+0.2
3,757,280	-		PGA1_c35880	0.42	+0.1
3,757,280	-		PGA1_c35880	0.42	-0.7
3,757,297	+		PGA1_c35880	0.47	-0.2
3,757,298	-		PGA1_c35880	0.47	-0.0
3,757,321	+		PGA1_c35880	0.54	-0.2
3,757,329	+		PGA1_c35880	0.56	-0.5
3,757,329	+		PGA1_c35880	0.56	-0.1
3,757,337	-		PGA1_c35880	0.58	-1.8
3,757,337	-		PGA1_c35880	0.58	-0.3
3,757,342	+		PGA1_c35880	0.59	-2.7
3,757,342	+		PGA1_c35880	0.59	-1.2
3,757,342	+		PGA1_c35880	0.59	+0.9
3,757,342	+		PGA1_c35880	0.59	+0.1
3,757,342	+		PGA1_c35880	0.59	+0.5
3,757,342	+		PGA1_c35880	0.59	-0.0
3,757,342	+		PGA1_c35880	0.59	-0.9
3,757,342	+		PGA1_c35880	0.59	-1.3
3,757,350	-		PGA1_c35880	0.62	-0.7
3,757,350	-		PGA1_c35880	0.62	+0.0
3,757,350	-		PGA1_c35880	0.62	+1.1
3,757,350	-		PGA1_c35880	0.62	+0.1
3,757,350	-		PGA1_c35880	0.62	-0.4
3,757,350	-		PGA1_c35880	0.62	+0.2
3,757,350	-		PGA1_c35880	0.62	-0.5
3,757,356	+		PGA1_c35880	0.63	-1.9
3,757,364	-		PGA1_c35880	0.66	-0.4
3,757,388	+		PGA1_c35880	0.72	+2.0
3,757,388	+		PGA1_c35880	0.72	-1.5
3,757,388	+		PGA1_c35880	0.72	-0.7
3,757,388	+		PGA1_c35880	0.72	+0.6
3,757,388	+		PGA1_c35880	0.72	-0.5
3,757,396	-		PGA1_c35880	0.74	-2.6
3,757,396	-		PGA1_c35880	0.74	+0.3
3,757,396	-		PGA1_c35880	0.74	-0.5
3,757,396	-		PGA1_c35880	0.74	-0.1
3,757,396	-		PGA1_c35880	0.74	-0.4
3,757,396	-		PGA1_c35880	0.74	-0.4
3,757,396	-		PGA1_c35880	0.74	-0.2
3,757,396	-		PGA1_c35880	0.74	-2.2
3,757,396	-		PGA1_c35880	0.74	-1.2
3,757,396	-		PGA1_c35880	0.74	-0.8
3,757,396	-		PGA1_c35880	0.74	+0.2
3,757,396	-		PGA1_c35880	0.74	-2.4
3,757,421	-		PGA1_c35880	0.81	-0.2
3,757,432	+		PGA1_c35880	0.84	-0.4
3,757,432	+		PGA1_c35880	0.84	-0.7
3,757,432	+		PGA1_c35880	0.84	-0.2
3,757,440	-		PGA1_c35880	0.87	-0.5
3,757,440	-		PGA1_c35880	0.87	-0.9
3,757,440	-		PGA1_c35880	0.87	+0.6
3,757,442	-		PGA1_c35880	0.87	+0.1
3,757,444	+		PGA1_c35880	0.88	-2.9
3,757,466	+				-0.8
3,757,489	+				+0.8
3,757,530	+		PGA1_c35890	0.17	-0.9
3,757,538	-		PGA1_c35890	0.20	-0.3
3,757,552	+		PGA1_c35890	0.25	-0.3
3,757,583	-		PGA1_c35890	0.35	-1.7
3,757,674	+		PGA1_c35890	0.67	-0.9
3,757,689	-		PGA1_c35890	0.72	-0.1
3,757,691	+		PGA1_c35890	0.73	-0.4
3,757,691	+		PGA1_c35890	0.73	-0.6
3,757,691	+		PGA1_c35890	0.73	-0.9
3,757,691	+		PGA1_c35890	0.73	-0.3
3,757,699	-		PGA1_c35890	0.75	-1.4
3,757,699	-		PGA1_c35890	0.75	-1.3
3,757,699	-		PGA1_c35890	0.75	-1.5
3,757,699	-		PGA1_c35890	0.75	-1.3
3,757,699	-		PGA1_c35890	0.75	-0.7
3,757,699	-		PGA1_c35890	0.75	+0.6
3,757,699	-		PGA1_c35890	0.75	-0.3
3,757,720	+		PGA1_c35890	0.82	+0.1
3,757,745	+				+0.3
3,757,763	+				-1.7
3,757,772	-				+0.5
3,757,789	-				-2.9
3,757,789	-				+0.4
3,757,855	+				-1.2
3,757,863	-				-0.2
3,757,863	-				+0.1
3,757,863	-				-0.4
3,757,876	-				-1.6
3,757,924	+				-0.2
3,757,925	+				-3.2
3,757,927	+				-3.5
3,757,932	-				-0.8
3,757,932	-				+0.0
3,757,932	-				-1.1
3,757,942	+				-0.3
3,758,001	-				-1.3
3,758,011	-				-2.8
3,758,036	+				-0.0
3,758,044	-				-1.1
3,758,047	+				-0.9
3,758,057	+				-1.4
3,758,195	+		PGA1_c35900	0.18	-0.3
3,758,195	+		PGA1_c35900	0.18	+0.0
3,758,234	+		PGA1_c35900	0.20	-2.4
3,758,268	+		PGA1_c35900	0.22	+0.3
3,758,312	+		PGA1_c35900	0.24	-0.0
3,758,327	+		PGA1_c35900	0.25	-0.9
3,758,333	+		PGA1_c35900	0.26	-2.2
3,758,369	-		PGA1_c35900	0.28	-0.1
3,758,398	+		PGA1_c35900	0.29	-2.7
3,758,401	-		PGA1_c35900	0.30	-0.8
3,758,406	-		PGA1_c35900	0.30	+0.2
3,758,442	+		PGA1_c35900	0.32	-0.4
3,758,480	+		PGA1_c35900	0.34	-2.2
3,758,480	+		PGA1_c35900	0.34	+1.2
3,758,480	+		PGA1_c35900	0.34	-0.7
3,758,480	+		PGA1_c35900	0.34	-0.3
3,758,485	+		PGA1_c35900	0.35	-2.4
3,758,486	+		PGA1_c35900	0.35	-1.3
3,758,488	-		PGA1_c35900	0.35	+1.0
3,758,546	+		PGA1_c35900	0.38	-0.6
3,758,580	-		PGA1_c35900	0.40	-1.2
3,758,606	-		PGA1_c35900	0.42	-1.4
3,758,609	-		PGA1_c35900	0.42	-3.4
3,758,647	+		PGA1_c35900	0.44	-0.1
3,758,711	+		PGA1_c35900	0.48	-0.2
3,758,719	-		PGA1_c35900	0.48	-0.9
3,758,719	-		PGA1_c35900	0.48	-0.5
3,758,773	-		PGA1_c35900	0.51	+0.6
3,758,790	+		PGA1_c35900	0.52	-0.9
3,758,810	-		PGA1_c35900	0.54	-0.2
3,758,876	-		PGA1_c35900	0.58	+0.4
3,758,972	+		PGA1_c35900	0.63	+0.2
3,758,980	-		PGA1_c35900	0.64	-0.1
3,758,980	-		PGA1_c35900	0.64	+0.1
3,759,028	-		PGA1_c35900	0.66	-0.4
3,759,040	+		PGA1_c35900	0.67	-0.9
3,759,118	+		PGA1_c35900	0.72	-0.4
3,759,118	+		PGA1_c35900	0.72	-0.7
3,759,126	-		PGA1_c35900	0.72	-0.5
3,759,126	-		PGA1_c35900	0.72	-1.6
3,759,126	-		PGA1_c35900	0.72	-0.1
3,759,166	+		PGA1_c35900	0.75	-0.6
3,759,166	+		PGA1_c35900	0.75	+0.6
3,759,175	-		PGA1_c35900	0.75	+0.3
3,759,182	-		PGA1_c35900	0.75	+1.0
3,759,245	+		PGA1_c35900	0.79	+0.6
3,759,284	-		PGA1_c35900	0.81	-1.0
3,759,312	-		PGA1_c35900	0.83	-0.8
3,759,355	+		PGA1_c35900	0.86	-1.5
3,759,384	-		PGA1_c35900	0.87	+0.1
3,759,434	+				+0.5
3,759,466	-				+0.1
3,759,479	+				+0.1
3,759,479	+				-0.4
3,759,503	-				-0.4
3,759,525	-				-0.2
3,759,574	+				+0.5
3,759,593	-				-1.1
3,759,652	+				-0.8
3,759,660	-				-0.0
3,759,728	+		PGA1_c35910	0.18	-0.2
3,759,751	+		PGA1_c35910	0.21	-0.9
3,759,752	+		PGA1_c35910	0.21	-1.0
3,759,752	+		PGA1_c35910	0.21	-0.4
3,759,820	+		PGA1_c35910	0.31	+0.2
3,759,820	+		PGA1_c35910	0.31	+0.2
3,759,820	+		PGA1_c35910	0.31	+0.6
3,759,828	-		PGA1_c35910	0.32	-0.7
3,759,828	-		PGA1_c35910	0.32	-0.8
3,759,828	-		PGA1_c35910	0.32	+1.0
3,759,853	-		PGA1_c35910	0.36	+1.6
3,759,856	+		PGA1_c35910	0.36	+0.9
3,759,856	+		PGA1_c35910	0.36	-0.5
3,759,864	-		PGA1_c35910	0.38	-0.9
3,759,945	+		PGA1_c35910	0.49	-1.6
3,759,953	-		PGA1_c35910	0.50	-1.2
3,760,073	+		PGA1_c35910	0.68	-1.0
3,760,081	-		PGA1_c35910	0.69	-0.7
3,760,116	-		PGA1_c35910	0.74	+1.8
3,760,120	+		PGA1_c35910	0.74	-0.9
3,760,149	+		PGA1_c35910	0.79	-0.9
3,760,155	+		PGA1_c35910	0.80	+0.4
3,760,155	+		PGA1_c35910	0.80	-0.1
3,760,155	+		PGA1_c35910	0.80	+0.4
3,760,165	+		PGA1_c35910	0.81	-1.9
3,760,224	-		PGA1_c35910	0.89	-1.3
3,760,224	-		PGA1_c35910	0.89	+1.2
3,760,272	-				-1.1