Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28170

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,941,222	+				+2.1
2,941,240	-				+0.2
2,941,261	+				-0.1
2,941,269	-				-1.5
2,941,303	+		PGA1_c28160	0.11	-0.6
2,941,311	+		PGA1_c28160	0.12	-1.5
2,941,320	-		PGA1_c28160	0.13	-0.7
2,941,377	-		PGA1_c28160	0.19	-0.1
2,941,423	+		PGA1_c28160	0.24	-1.5
2,941,423	+		PGA1_c28160	0.24	-0.1
2,941,423	+		PGA1_c28160	0.24	+0.2
2,941,431	-		PGA1_c28160	0.25	-0.4
2,941,483	+		PGA1_c28160	0.30	-0.1
2,941,491	-		PGA1_c28160	0.31	+1.4
2,941,505	+		PGA1_c28160	0.33	+1.7
2,941,598	+		PGA1_c28160	0.43	+0.7
2,941,605	-		PGA1_c28160	0.44	-0.2
2,941,612	+		PGA1_c28160	0.44	-0.3
2,941,702	+		PGA1_c28160	0.54	+0.1
2,941,762	-		PGA1_c28160	0.61	-1.3
2,941,780	+		PGA1_c28160	0.63	+1.5
2,941,812	-		PGA1_c28160	0.66	+1.4
2,941,831	+		PGA1_c28160	0.68	-0.6
2,941,833	-		PGA1_c28160	0.68	-2.5
2,941,859	+		PGA1_c28160	0.71	-0.3
2,941,859	+		PGA1_c28160	0.71	-0.5
2,941,973	+		PGA1_c28160	0.84	-0.1
2,941,975	-		PGA1_c28160	0.84	-1.6
2,941,987	+		PGA1_c28160	0.85	+1.3
2,942,041	+				-0.5
2,942,049	-				-0.7
2,942,052	-				+1.1
2,942,070	+				-1.7
2,942,078	-				-0.0
2,942,078	-				+0.0
2,942,083	-				-2.7
2,942,130	-				+0.9
2,942,130	-				-0.5
2,942,153	+				+0.3
2,942,153	+				+3.3
2,942,153	+				+1.5
2,942,155	+				+0.5
2,942,158	+				-0.5
2,942,160	+				+0.1
2,942,161	-				-0.1
2,942,219	-				-0.5
2,942,221	+				+0.3
2,942,267	+				-1.3
2,942,342	-		PGA1_c28170	0.14	+0.5
2,942,424	-		PGA1_c28170	0.21	+0.4
2,942,556	-		PGA1_c28170	0.33	+0.6
2,942,568	+		PGA1_c28170	0.35	-0.2
2,942,607	+		PGA1_c28170	0.38	-0.4
2,942,607	+		PGA1_c28170	0.38	+1.3
2,942,607	+		PGA1_c28170	0.38	-3.0
2,942,607	+		PGA1_c28170	0.38	-0.0
2,942,607	+		PGA1_c28170	0.38	+1.0
2,942,607	+		PGA1_c28170	0.38	-2.5
2,942,607	+		PGA1_c28170	0.38	+0.3
2,942,607	+		PGA1_c28170	0.38	+1.0
2,942,607	+		PGA1_c28170	0.38	+0.1
2,942,607	+		PGA1_c28170	0.38	+1.5
2,942,612	+		PGA1_c28170	0.39	-0.4
2,942,615	-		PGA1_c28170	0.39	-0.3
2,942,615	-		PGA1_c28170	0.39	-0.6
2,942,615	-		PGA1_c28170	0.39	-1.5
2,942,615	-		PGA1_c28170	0.39	-0.5
2,942,615	-		PGA1_c28170	0.39	+0.5
2,942,615	-		PGA1_c28170	0.39	+0.5
2,942,615	-		PGA1_c28170	0.39	+0.2
2,942,615	-		PGA1_c28170	0.39	+0.9
2,942,741	+		PGA1_c28170	0.51	-0.3
2,942,810	-		PGA1_c28170	0.57	+1.1
2,942,885	+		PGA1_c28170	0.64	+0.3
2,942,885	+		PGA1_c28170	0.64	-1.6
2,942,885	+		PGA1_c28170	0.64	+0.5
2,942,886	+		PGA1_c28170	0.64	+0.7
2,942,893	-		PGA1_c28170	0.65	+2.1
2,942,893	-		PGA1_c28170	0.65	+0.5
2,942,901	-		PGA1_c28170	0.65	+0.3
2,942,901	-		PGA1_c28170	0.65	-1.5
2,942,901	-		PGA1_c28170	0.65	+0.6
2,942,901	-		PGA1_c28170	0.65	+0.3
2,942,967	-		PGA1_c28170	0.72	+1.2
2,942,986	+		PGA1_c28170	0.73	+0.0
2,943,040	-		PGA1_c28170	0.78	+0.6
2,943,078	-		PGA1_c28170	0.82	+1.5
2,943,115	+		PGA1_c28170	0.85	+0.0
2,943,175	+				-0.7
2,943,183	-				-0.5
2,943,184	+				+0.3
2,943,255	-				-1.1
2,943,382	+				+0.3
2,943,388	+				+0.3
2,943,390	-				+1.5
2,943,395	+				-1.6
2,943,395	+				-0.1
2,943,396	-				-0.2
2,943,403	-				-1.7
2,943,403	-				+0.4
2,943,492	-				-0.5
2,943,499	-				+0.1
2,943,539	-		PGA1_c28180	0.15	+0.1
2,943,570	+		PGA1_c28180	0.20	-1.6
2,943,587	+		PGA1_c28180	0.23	-0.3
2,943,589	+		PGA1_c28180	0.24	-0.2
2,943,618	+		PGA1_c28180	0.28	-0.2
2,943,618	+		PGA1_c28180	0.28	+0.6
2,943,683	+		PGA1_c28180	0.39	+0.7
2,943,704	-		PGA1_c28180	0.42	-0.4
2,943,753	+		PGA1_c28180	0.50	-0.9
2,943,753	+		PGA1_c28180	0.50	+0.1
2,943,761	-		PGA1_c28180	0.52	+0.9
2,943,784	-		PGA1_c28180	0.55	-0.2
2,943,828	+		PGA1_c28180	0.63	+0.6
2,943,843	+		PGA1_c28180	0.65	-0.9
2,943,851	-		PGA1_c28180	0.66	+0.6
2,943,852	+		PGA1_c28180	0.67	+0.6
2,943,977	-				+0.3
2,943,998	+				+1.2
2,944,030	-				+0.1
2,944,052	+				+0.3
2,944,062	+				-1.1
2,944,062	+				+0.2
2,944,062	+				+0.6
2,944,062	+				+0.6
2,944,062	+				-0.7
2,944,062	+				-1.4
2,944,062	+				+0.3
2,944,062	+				-0.8
2,944,062	+				+0.9
2,944,062	+				-0.7
2,944,062	+				+0.1
2,944,062	+				+3.1
2,944,062	+				+1.3
2,944,062	+				+0.5
2,944,062	+				+0.8
2,944,062	+				+1.1
2,944,062	+				+0.1
2,944,062	+				+1.1
2,944,062	+				-0.7
2,944,062	+				-0.4
2,944,062	+				+0.8
2,944,062	+				+0.9
2,944,062	+				+0.5
2,944,062	+				+1.5
2,944,062	+				+0.4
2,944,062	+				+0.5
2,944,062	+				+0.3
2,944,062	+				+0.1
2,944,062	+				+0.7
2,944,062	+				-0.0
2,944,062	+				+0.5
2,944,062	+				+0.5
2,944,062	+				-0.0
2,944,062	+				+1.9
2,944,062	+				-1.4
2,944,062	+				+0.2
2,944,062	+				-0.1
2,944,062	+				-0.5
2,944,062	+				+0.1
2,944,062	+				+1.1
2,944,062	+				+1.6
2,944,062	+				+0.3
2,944,062	+				+0.5
2,944,062	+				-0.3
2,944,070	-				-1.4
2,944,070	-				+0.3
2,944,070	-				+0.5
2,944,070	-				-0.4
2,944,070	-				-0.4
2,944,070	-				-0.2
2,944,070	-				-1.3
2,944,070	-				+1.3
2,944,070	-				+0.0
2,944,070	-				+0.5
2,944,070	-				-0.0
2,944,070	-				+0.6
2,944,070	-				-0.4
2,944,070	-				-1.9
2,944,070	-				+0.7
2,944,070	-				-1.2
2,944,070	-				-0.2
2,944,070	-				-0.7
2,944,070	-				-0.0
2,944,070	-				+0.5
2,944,070	-				-0.9
2,944,070	-				-1.2
2,944,070	-				-2.0
2,944,070	-				+2.1
2,944,070	-				+1.3
2,944,070	-				+0.7
2,944,070	-				+0.2
2,944,070	-				+2.9
2,944,070	-				+0.0
2,944,070	-				+1.9
2,944,070	-				+1.7
2,944,070	-				-1.7
2,944,070	-				+1.1
2,944,070	-				-0.2
2,944,070	-				+1.7
2,944,070	-				-0.4
2,944,070	-				+1.2
2,944,070	-				-0.5
2,944,070	-				-0.1
2,944,070	-				+1.3
2,944,070	-				-0.1
2,944,070	-				-0.2
2,944,070	-				+0.4
2,944,070	-				+1.7
2,944,070	-				+0.5
2,944,070	-				+0.3
2,944,070	-				+0.3
2,944,070	-				-1.5
2,944,070	-				-0.7
2,944,070	-				-0.2
2,944,095	+				+1.2
2,944,097	+				+0.7
2,944,202	-				+0.4
2,944,225	-				+0.9