Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23400

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,431,742	-		PGA1_c23390	0.68	+1.4
2,431,794	-		PGA1_c23390	0.70	-1.5
2,431,794	-		PGA1_c23390	0.70	-2.7
2,431,856	-		PGA1_c23390	0.73	-1.3
2,431,914	+		PGA1_c23390	0.75	-1.4
2,431,934	+		PGA1_c23390	0.76	-0.1
2,431,965	+		PGA1_c23390	0.77	+0.8
2,431,990	-		PGA1_c23390	0.79	+1.0
2,432,012	-		PGA1_c23390	0.79	-2.0
2,432,014	-		PGA1_c23390	0.79	-0.7
2,432,095	+		PGA1_c23390	0.83	-0.3
2,432,095	+		PGA1_c23390	0.83	+1.1
2,432,103	-		PGA1_c23390	0.83	-0.0
2,432,123	-		PGA1_c23390	0.84	-0.2
2,432,154	-		PGA1_c23390	0.85	+0.7
2,432,168	+		PGA1_c23390	0.86	-1.7
2,432,168	+		PGA1_c23390	0.86	-0.3
2,432,176	-		PGA1_c23390	0.86	-0.4
2,432,176	-		PGA1_c23390	0.86	+1.3
2,432,176	-		PGA1_c23390	0.86	-0.3
2,432,176	-		PGA1_c23390	0.86	+0.1
2,432,181	+		PGA1_c23390	0.86	+1.2
2,432,188	-		PGA1_c23390	0.87	+0.7
2,432,203	+		PGA1_c23390	0.87	-0.3
2,432,211	-		PGA1_c23390	0.88	+0.3
2,432,282	-				+0.3
2,432,282	-				+0.3
2,432,337	-				+1.2
2,432,349	-				+0.4
2,432,401	-				+0.9
2,432,436	+				-1.3
2,432,436	+				+0.1
2,432,436	+				-0.1
2,432,441	+				-0.0
2,432,444	-				+0.2
2,432,444	-				+0.9
2,432,444	-				-1.0
2,432,444	-				-0.1
2,432,444	-				-2.0
2,432,449	-				-1.9
2,432,514	-				-1.7
2,432,531	-				-0.3
2,432,622	+				-0.1
2,432,622	+				-0.3
2,432,630	+				+0.1
2,432,630	-				+2.6
2,432,630	-				+0.3
2,432,641	-				+0.1
2,432,691	-				-0.9
2,432,814	+		PGA1_c23400	0.19	-0.2
2,432,814	+		PGA1_c23400	0.19	-0.7
2,432,821	+		PGA1_c23400	0.20	-0.3
2,432,836	-		PGA1_c23400	0.22	+0.8
2,432,980	-		PGA1_c23400	0.40	-2.3
2,432,998	+		PGA1_c23400	0.43	-1.7
2,433,005	+		PGA1_c23400	0.44	+0.9
2,433,030	+		PGA1_c23400	0.47	+0.8
2,433,030	+		PGA1_c23400	0.47	+0.6
2,433,038	-		PGA1_c23400	0.48	-0.9
2,433,038	-		PGA1_c23400	0.48	-0.0
2,433,040	+		PGA1_c23400	0.48	+1.8
2,433,040	+		PGA1_c23400	0.48	+1.4
2,433,083	-		PGA1_c23400	0.53	+0.3
2,433,104	+		PGA1_c23400	0.56	+0.9
2,433,104	+		PGA1_c23400	0.56	+0.5
2,433,112	-		PGA1_c23400	0.57	-0.2
2,433,146	+		PGA1_c23400	0.61	+1.3
2,433,161	-		PGA1_c23400	0.63	+1.0
2,433,181	+		PGA1_c23400	0.66	+1.1
2,433,181	-		PGA1_c23400	0.66	-0.9
2,433,183	-		PGA1_c23400	0.66	+0.7
2,433,183	-		PGA1_c23400	0.66	-1.3
2,433,192	+		PGA1_c23400	0.67	-1.7
2,433,192	+		PGA1_c23400	0.67	+0.6
2,433,267	-		PGA1_c23400	0.77	+2.6
2,433,303	+		PGA1_c23400	0.81	-3.2
2,433,303	+		PGA1_c23400	0.81	-0.5
2,433,311	-		PGA1_c23400	0.82	+1.3
2,433,332	+		PGA1_c23400	0.85	-0.4
2,433,347	-		PGA1_c23400	0.87	+0.9
2,433,347	-		PGA1_c23400	0.87	+0.5
2,433,361	+		PGA1_c23400	0.89	+0.7
2,433,495	+				+0.8
2,433,511	+				-0.0
2,433,548	+				-0.5
2,433,554	+				+0.6
2,433,554	+				-1.6
2,433,554	+				+0.3
2,433,554	+				-0.3
2,433,562	-				+1.5
2,433,562	-				+0.3
2,433,628	+				-1.3
2,433,717	+		PGA1_c23410	0.16	-0.3
2,433,725	+		PGA1_c23410	0.17	-0.2
2,433,733	-		PGA1_c23410	0.18	+0.4
2,433,747	+		PGA1_c23410	0.19	+0.1
2,433,748	-		PGA1_c23410	0.20	-0.2
2,433,770	+		PGA1_c23410	0.22	-2.0
2,433,779	+		PGA1_c23410	0.23	-0.7
2,433,779	+		PGA1_c23410	0.23	+1.2
2,433,779	+		PGA1_c23410	0.23	+0.6
2,433,779	+		PGA1_c23410	0.23	+0.3
2,433,779	+		PGA1_c23410	0.23	-0.7
2,433,779	+		PGA1_c23410	0.23	-0.1
2,433,779	+		PGA1_c23410	0.23	-0.5
2,433,787	-		PGA1_c23410	0.25	-0.9
2,433,787	-		PGA1_c23410	0.25	-0.7
2,433,787	-		PGA1_c23410	0.25	+0.8
2,433,787	-		PGA1_c23410	0.25	-1.5
2,433,854	+		PGA1_c23410	0.33	-0.1
2,433,905	+		PGA1_c23410	0.40	+0.3
2,433,905	+		PGA1_c23410	0.40	+0.6
2,433,905	+		PGA1_c23410	0.40	+1.3
2,433,913	-		PGA1_c23410	0.41	+0.3
2,434,012	+		PGA1_c23410	0.53	+0.6
2,434,025	-		PGA1_c23410	0.55	-0.0
2,434,025	-		PGA1_c23410	0.55	-0.4
2,434,027	-		PGA1_c23410	0.55	+1.8
2,434,039	+		PGA1_c23410	0.57	+0.4
2,434,040	+		PGA1_c23410	0.57	+0.2
2,434,070	+		PGA1_c23410	0.61	+0.1
2,434,075	+		PGA1_c23410	0.61	+0.3
2,434,075	+		PGA1_c23410	0.61	+0.2
2,434,082	+		PGA1_c23410	0.62	+1.0
2,434,082	+		PGA1_c23410	0.62	-0.1
2,434,082	+		PGA1_c23410	0.62	-1.0
2,434,082	+		PGA1_c23410	0.62	+0.8
2,434,082	+		PGA1_c23410	0.62	+0.5
2,434,083	+		PGA1_c23410	0.62	-0.5
2,434,083	+		PGA1_c23410	0.62	-0.6
2,434,083	+		PGA1_c23410	0.62	-1.2
2,434,083	+		PGA1_c23410	0.62	+1.2
2,434,085	-		PGA1_c23410	0.63	-0.5
2,434,090	-		PGA1_c23410	0.63	+0.6
2,434,090	-		PGA1_c23410	0.63	-0.7
2,434,091	-		PGA1_c23410	0.63	+0.3
2,434,091	-		PGA1_c23410	0.63	+1.3
2,434,094	+		PGA1_c23410	0.64	-0.7
2,434,094	+		PGA1_c23410	0.64	+0.7
2,434,094	+		PGA1_c23410	0.64	-0.5
2,434,094	+		PGA1_c23410	0.64	+0.6
2,434,094	+		PGA1_c23410	0.64	-0.4
2,434,094	+		PGA1_c23410	0.64	-0.1
2,434,094	+		PGA1_c23410	0.64	+1.9
2,434,094	+		PGA1_c23410	0.64	+0.6
2,434,094	+		PGA1_c23410	0.64	-0.4
2,434,094	+		PGA1_c23410	0.64	+1.9
2,434,094	+		PGA1_c23410	0.64	-1.2
2,434,094	+		PGA1_c23410	0.64	-0.5
2,434,094	+		PGA1_c23410	0.64	-0.6
2,434,094	+		PGA1_c23410	0.64	+2.9
2,434,094	+		PGA1_c23410	0.64	+0.0
2,434,094	+		PGA1_c23410	0.64	-1.8
2,434,102	-		PGA1_c23410	0.65	-1.7
2,434,102	-		PGA1_c23410	0.65	+0.3
2,434,102	-		PGA1_c23410	0.65	+0.5
2,434,102	-		PGA1_c23410	0.65	-0.0
2,434,102	-		PGA1_c23410	0.65	-0.2
2,434,102	-		PGA1_c23410	0.65	+0.0
2,434,102	-		PGA1_c23410	0.65	+1.7
2,434,102	-		PGA1_c23410	0.65	-0.5
2,434,102	-		PGA1_c23410	0.65	+0.5
2,434,102	-		PGA1_c23410	0.65	-0.3
2,434,102	-		PGA1_c23410	0.65	-0.3
2,434,102	-		PGA1_c23410	0.65	-0.4
2,434,102	-		PGA1_c23410	0.65	-1.2
2,434,102	-		PGA1_c23410	0.65	+0.3
2,434,102	-		PGA1_c23410	0.65	-1.5
2,434,102	-		PGA1_c23410	0.65	+0.1
2,434,127	+		PGA1_c23410	0.68	-0.1
2,434,127	+		PGA1_c23410	0.68	-0.4
2,434,127	+		PGA1_c23410	0.68	-0.7
2,434,127	+		PGA1_c23410	0.68	+1.1
2,434,127	+		PGA1_c23410	0.68	-0.0
2,434,127	+		PGA1_c23410	0.68	+0.5
2,434,127	+		PGA1_c23410	0.68	-0.7
2,434,130	-		PGA1_c23410	0.68	-0.0
2,434,135	-		PGA1_c23410	0.69	+1.4
2,434,135	-		PGA1_c23410	0.69	+1.3
2,434,135	-		PGA1_c23410	0.69	+0.9
2,434,135	-		PGA1_c23410	0.69	-1.1
2,434,135	-		PGA1_c23410	0.69	+0.4
2,434,138	-		PGA1_c23410	0.69	-0.2
2,434,138	-		PGA1_c23410	0.69	+1.1
2,434,219	-		PGA1_c23410	0.80	+0.3
2,434,245	-		PGA1_c23410	0.83	-0.3
2,434,250	-		PGA1_c23410	0.84	+0.2
2,434,270	+		PGA1_c23410	0.86	-2.4
2,434,279	-		PGA1_c23410	0.87	-0.2
2,434,321	+				+1.6
2,434,328	+				+1.2
2,434,328	+				-0.7
2,434,328	+				-0.1
2,434,328	+				-0.3
2,434,336	-				+0.5
2,434,336	-				+0.3
2,434,345	-				+0.3
2,434,352	+				+0.3
2,434,395	+				+1.0
2,434,395	+				+1.6
2,434,399	-				-1.0
2,434,403	-				-2.0
2,434,403	-				+0.5
2,434,403	-				+0.1
2,434,403	-				+1.0
2,434,407	-				-0.5
2,434,409	+				+0.5
2,434,409	+				-0.6
2,434,417	+				-0.5
2,434,425	-				-2.0
2,434,425	-				-1.9
2,434,437	-				+2.1
2,434,448	-				+1.0
2,434,448	-				-0.4