Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18700

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
1,938,645	-		PGA1_c18680	0.30	+1.2
1,938,679	-		PGA1_c18680	0.33	+0.6
1,938,679	-		PGA1_c18680	0.33	+1.0
1,938,679	-		PGA1_c18680	0.33	+0.1
1,938,706	+		PGA1_c18680	0.36	+0.6
1,938,714	-		PGA1_c18680	0.37	-0.1
1,938,717	+		PGA1_c18680	0.37	+2.9
1,938,757	+		PGA1_c18680	0.41	-0.4
1,938,772	+		PGA1_c18680	0.42	+1.1
1,938,781	-		PGA1_c18680	0.43	-1.9
1,938,781	-		PGA1_c18680	0.43	-0.2
1,938,806	+		PGA1_c18680	0.46	+2.2
1,938,814	-		PGA1_c18680	0.47	-2.1
1,938,821	+		PGA1_c18680	0.47	+1.5
1,938,827	+		PGA1_c18680	0.48	-2.0
1,938,827	+		PGA1_c18680	0.48	-0.7
1,938,853	+		PGA1_c18680	0.50	+1.8
1,938,860	+		PGA1_c18680	0.51	-1.1
1,938,914	+		PGA1_c18680	0.56	-0.1
1,938,922	-		PGA1_c18680	0.57	+1.5
1,938,985	-		PGA1_c18680	0.64	-0.1
1,938,985	-		PGA1_c18680	0.64	-1.0
1,938,985	-		PGA1_c18680	0.64	+0.8
1,939,013	+		PGA1_c18680	0.66	+1.2
1,939,013	+		PGA1_c18680	0.66	+0.8
1,939,021	-		PGA1_c18680	0.67	-0.8
1,939,021	-		PGA1_c18680	0.67	+3.0
1,939,021	-		PGA1_c18680	0.67	+0.6
1,939,021	-		PGA1_c18680	0.67	+1.7
1,939,021	-		PGA1_c18680	0.67	+0.8
1,939,021	-		PGA1_c18680	0.67	-1.1
1,939,021	-		PGA1_c18680	0.67	+2.2
1,939,047	+		PGA1_c18680	0.70	+0.2
1,939,059	+		PGA1_c18680	0.71	+0.6
1,939,095	+		PGA1_c18680	0.75	-0.0
1,939,097	+		PGA1_c18680	0.75	+0.0
1,939,097	+				-0.8
1,939,097	+		PGA1_c18680	0.75	-0.0
1,939,097	+		PGA1_c18680	0.75	+0.2
1,939,105	-		PGA1_c18680	0.76	-0.8
1,939,105	-		PGA1_c18680	0.76	+1.5
1,939,105	-		PGA1_c18680	0.76	+1.1
1,939,105	-		PGA1_c18680	0.76	-2.1
1,939,120	+		PGA1_c18680	0.77	-0.8
1,939,122	+		PGA1_c18680	0.77	+0.4
1,939,122	+		PGA1_c18680	0.77	-0.6
1,939,184	-		PGA1_c18680	0.83	-0.2
1,939,187	+		PGA1_c18680	0.84	+0.8
1,939,331	-				+0.7
1,939,340	-				-1.9
1,939,340	-				-1.0
1,939,626	+				-2.2
1,939,634	-				-1.1
1,939,661	-				-0.9
1,939,663	+				-0.8
1,939,671	-				+0.7
1,939,671	-				+1.0
1,939,674	-				+0.9
1,939,707	+				-1.3
1,939,881	+		PGA1_c18700	0.14	-0.3
1,939,912	+		PGA1_c18700	0.16	-0.1
1,939,919	+		PGA1_c18700	0.16	+1.8
1,939,920	-		PGA1_c18700	0.16	+0.2
1,940,119	-		PGA1_c18700	0.28	+0.8
1,940,170	+		PGA1_c18700	0.31	+1.4
1,940,176	+		PGA1_c18700	0.31	-0.2
1,940,185	-		PGA1_c18700	0.32	-0.2
1,940,188	+		PGA1_c18700	0.32	+1.6
1,940,251	-		PGA1_c18700	0.36	+0.7
1,940,253	-		PGA1_c18700	0.36	+1.8
1,940,260	+		PGA1_c18700	0.36	-0.0
1,940,268	-		PGA1_c18700	0.37	-1.0
1,940,353	-		PGA1_c18700	0.42	+0.4
1,940,355	+		PGA1_c18700	0.42	+0.6
1,940,405	+		PGA1_c18700	0.45	+0.3
1,940,427	+		PGA1_c18700	0.46	+0.2
1,940,433	+		PGA1_c18700	0.46	-0.4
1,940,435	-		PGA1_c18700	0.47	+0.4
1,940,435	-		PGA1_c18700	0.47	+0.5
1,940,474	+		PGA1_c18700	0.49	-2.3
1,940,512	-		PGA1_c18700	0.51	+0.1
1,940,555	+		PGA1_c18700	0.54	+1.2
1,940,555	+		PGA1_c18700	0.54	+1.6
1,940,558	-		PGA1_c18700	0.54	+0.2
1,940,563	-		PGA1_c18700	0.54	-1.8
1,940,590	-		PGA1_c18700	0.56	-0.3
1,940,600	+		PGA1_c18700	0.56	+0.9
1,940,607	+		PGA1_c18700	0.57	-0.2
1,940,614	+		PGA1_c18700	0.57	+0.5
1,940,658	-		PGA1_c18700	0.60	+0.2
1,940,688	+		PGA1_c18700	0.61	+0.9
1,940,688	+		PGA1_c18700	0.61	-2.3
1,940,688	+		PGA1_c18700	0.61	+0.5
1,940,696	-		PGA1_c18700	0.62	+1.2
1,940,711	-		PGA1_c18700	0.63	+0.6
1,940,718	-		PGA1_c18700	0.63	+0.6
1,940,718	-		PGA1_c18700	0.63	-0.9
1,940,736	-		PGA1_c18700	0.64	+1.0
1,940,754	+		PGA1_c18700	0.65	+2.2
1,940,793	-		PGA1_c18700	0.68	-0.2
1,940,794	+		PGA1_c18700	0.68	+0.2
1,940,878	-		PGA1_c18700	0.73	+0.8
1,940,880	-		PGA1_c18700	0.73	+1.0
1,940,890	-		PGA1_c18700	0.73	+0.2
1,940,892	-		PGA1_c18700	0.73	-0.9
1,940,917	+		PGA1_c18700	0.75	+1.0
1,940,917	+		PGA1_c18700	0.75	+0.2
1,940,918	+		PGA1_c18700	0.75	+0.2
1,940,926	-		PGA1_c18700	0.75	-0.2
1,940,938	+		PGA1_c18700	0.76	+0.2
1,940,938	+		PGA1_c18700	0.76	+0.1
1,940,948	+		PGA1_c18700	0.77	-0.4
1,940,948	+		PGA1_c18700	0.77	-1.9
1,940,948	+		PGA1_c18700	0.77	-1.0
1,940,948	+		PGA1_c18700	0.77	-0.3
1,940,948	+		PGA1_c18700	0.77	+1.8
1,940,956	-		PGA1_c18700	0.77	-0.8
1,940,956	-		PGA1_c18700	0.77	+0.5
1,940,975	-		PGA1_c18700	0.78	-1.3
1,940,983	-		PGA1_c18700	0.79	+0.2
1,940,983	-		PGA1_c18700	0.79	-2.0
1,940,983	-		PGA1_c18700	0.79	+0.2
1,940,983	-		PGA1_c18700	0.79	-1.2
1,941,065	-		PGA1_c18700	0.84	-0.8
1,941,081	-		PGA1_c18700	0.85	+1.1
1,941,109	+		PGA1_c18700	0.86	+1.7
1,941,117	-		PGA1_c18700	0.87	+1.0
1,941,117	-		PGA1_c18700	0.87	+1.0
1,941,130	+		PGA1_c18700	0.87	+0.4
1,941,130	+		PGA1_c18700	0.87	+0.7
1,941,135	+		PGA1_c18700	0.88	-0.1
1,941,165	-		PGA1_c18700	0.90	+1.0
1,941,169	+		PGA1_c18700	0.90	+0.9
1,941,169	+		PGA1_c18700	0.90	-0.4
1,941,169	+		PGA1_c18700	0.90	-0.2
1,941,177	-				-0.3
1,941,177	-				+0.7
1,941,177	-				-0.6
1,941,177	-				-0.3
1,941,177	-				+1.8
1,941,177	-				-1.3
1,941,239	-				-0.3
1,941,245	-				+1.4
1,941,269	-				+0.1
1,941,300	+				+0.2
1,941,300	+				+0.3
1,941,300	+				-0.1
1,941,300	+				-0.2
1,941,308	-				+1.0
1,941,308	-				+2.2
1,941,308	-				-0.1
1,941,313	+				-2.8
1,941,313	+				-0.3
1,941,313	+				-0.2
1,941,313	+				-1.9
1,941,313	+				-0.8
1,941,321	-				-1.2
1,941,350	-				-1.8
1,941,867	+				+0.2
1,941,867	+				-0.3
1,941,874	+				+0.8
1,941,923	+				-0.5
1,941,948	+				-1.5