Strain Fitness in Shewanella amazonensis SB2B around Sama_2522

Experiment: LB rep2 t2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB rep2 t2
3,029,908	+		Sama_2521	0.21	-0.7
3,029,943	+		Sama_2521	0.24	+0.7
3,029,986	+		Sama_2521	0.28	+0.3
3,030,046	+		Sama_2521	0.33	-1.3
3,030,077	+		Sama_2521	0.36	+0.1
3,030,157	+		Sama_2521	0.43	-0.5
3,030,177	+		Sama_2521	0.45	-1.1
3,030,177	+		Sama_2521	0.45	+0.3
3,030,177	+		Sama_2521	0.45	+0.3
3,030,177	+		Sama_2521	0.45	-3.1
3,030,202	+		Sama_2521	0.47	-0.5
3,030,202	+		Sama_2521	0.47	+1.2
3,030,294	+		Sama_2521	0.55	-2.6
3,030,294	+		Sama_2521	0.55	+0.7
3,030,304	+		Sama_2521	0.56	-1.5
3,030,326	+		Sama_2521	0.58	-0.3
3,030,326	+		Sama_2521	0.58	-0.6
3,030,326	+		Sama_2521	0.58	+0.7
3,030,326	+		Sama_2521	0.58	+0.2
3,030,326	+		Sama_2521	0.58	-0.9
3,030,326	+		Sama_2521	0.58	+0.0
3,030,326	+		Sama_2521	0.58	+0.5
3,030,328	+		Sama_2521	0.58	+1.2
3,030,328	+		Sama_2521	0.58	-0.8
3,030,349	+		Sama_2521	0.60	-1.1
3,030,425	+		Sama_2521	0.67	+0.2
3,030,524	+		Sama_2521	0.76	-0.8
3,030,524	+		Sama_2521	0.76	-1.3
3,030,524	+		Sama_2521	0.76	-0.8
3,030,525	-		Sama_2521	0.76	+1.3
3,030,605	+		Sama_2521	0.83	+0.9
3,030,605	+		Sama_2521	0.83	-0.7
3,030,605	+		Sama_2521	0.83	-0.8
3,030,605	+		Sama_2521	0.83	-0.3
3,030,605	+		Sama_2521	0.83	-1.3
3,030,605	+		Sama_2521	0.83	-0.3
3,030,707	+				-1.3
3,030,769	+				-0.3
3,030,825	+				-1.0
3,030,825	+				+0.1
3,030,831	+				-1.8
3,030,842	+				-1.4
3,030,912	+				+0.2
3,030,919	+				-0.3
3,030,940	+				-0.5
3,030,940	+				-0.9
3,030,940	+				-0.5
3,030,983	+				-1.7
3,030,983	+				-1.5
3,030,983	+				-0.7
3,030,983	+				-1.7
3,030,983	+				-0.6
3,030,983	+				-1.8
3,031,072	+		Sama_2522	0.14	+1.7
3,031,090	+		Sama_2522	0.15	-1.3
3,031,090	+		Sama_2522	0.15	-1.2
3,031,090	+		Sama_2522	0.15	+0.3
3,031,090	+		Sama_2522	0.15	+0.2
3,031,090	+		Sama_2522	0.15	-0.6
3,031,090	+		Sama_2522	0.15	+0.7
3,031,091	-		Sama_2522	0.15	-0.3
3,031,215	+		Sama_2522	0.22	-1.6
3,031,215	+		Sama_2522	0.22	+0.7
3,031,255	+		Sama_2522	0.25	+0.5
3,031,255	+		Sama_2522	0.25	-3.1
3,031,255	+		Sama_2522	0.25	-0.8
3,031,288	+		Sama_2522	0.27	-1.6
3,031,288	+		Sama_2522	0.27	-2.3
3,031,288	+		Sama_2522	0.27	-0.8
3,031,288	+		Sama_2522	0.27	+0.1
3,031,289	-		Sama_2522	0.27	-2.3
3,031,426	+		Sama_2522	0.35	-1.8
3,031,426	+		Sama_2522	0.35	-2.3
3,031,426	+		Sama_2522	0.35	-1.3
3,031,426	+		Sama_2522	0.35	+0.2
3,031,426	+		Sama_2522	0.35	-0.8
3,031,493	+		Sama_2522	0.39	+0.2
3,031,584	+		Sama_2522	0.44	-1.3
3,031,636	+		Sama_2522	0.47	-1.3
3,031,636	+		Sama_2522	0.47	-0.8
3,031,636	+		Sama_2522	0.47	+1.7
3,031,636	+		Sama_2522	0.47	-1.3
3,031,662	+		Sama_2522	0.49	-0.5
3,031,668	+		Sama_2522	0.49	-0.3
3,031,668	+		Sama_2522	0.49	-0.5
3,031,701	+		Sama_2522	0.51	-0.7
3,031,707	+		Sama_2522	0.51	-1.1
3,031,743	+		Sama_2522	0.53	-1.0
3,031,743	+		Sama_2522	0.53	-1.3
3,031,743	+		Sama_2522	0.53	-1.8
3,031,904	+		Sama_2522	0.63	-1.8
3,031,904	+		Sama_2522	0.63	-0.3
3,031,904	+		Sama_2522	0.63	+2.5
3,031,919	+		Sama_2522	0.64	-1.8
3,031,919	+		Sama_2522	0.64	+1.3
3,031,919	+		Sama_2522	0.64	-1.3
3,032,027	+		Sama_2522	0.70	-0.3
3,032,027	+		Sama_2522	0.70	-0.3
3,032,027	+		Sama_2522	0.70	-0.6
3,032,027	+		Sama_2522	0.70	+0.3
3,032,027	+		Sama_2522	0.70	-1.3
3,032,027	+		Sama_2522	0.70	-2.4
3,032,027	+		Sama_2522	0.70	+0.7
3,032,107	+		Sama_2522	0.75	-1.8
3,032,107	+		Sama_2522	0.75	-0.5
3,032,107	+		Sama_2522	0.75	-0.3
3,032,107	+		Sama_2522	0.75	-1.8
3,032,226	+		Sama_2522	0.82	+0.7
3,032,443	+				-0.7
3,032,462	+				-0.3
3,032,462	+				-0.9
3,032,462	+				-1.3
3,032,493	+				-1.3
3,032,496	+				-1.1
3,032,496	+				+0.7
3,032,496	+				-0.3
3,032,496	+				-0.4
3,032,507	+				+1.3
3,032,507	+				-1.4
3,032,507	+				-0.7
3,032,507	+				-0.6
3,032,507	+				-1.5
3,032,523	+				+0.0
3,032,523	+				-1.1
3,032,523	+				+1.0
3,032,523	+				-0.6
3,032,523	+				-0.2
3,032,523	+				+0.3
3,032,523	+				-0.6
3,032,523	+				-0.6
3,032,523	+				-0.3
3,032,523	+				+0.3
3,032,524	-				+0.3
3,032,524	-				+0.9
3,032,524	-				+0.1
3,032,524	-				+0.3
3,032,524	-				+0.1
3,032,524	-				+0.1
3,032,524	-				+0.5
3,032,524	-				-0.1
3,032,524	-				+0.9
3,032,524	-				+0.0
3,032,524	-				-0.5
3,032,524	-				-0.1
3,032,524	-				+0.3
3,032,524	-				+0.3
3,032,528	+				+1.5
3,032,546	+				+1.3
3,032,547	-				-0.3
3,032,636	+				-1.3
3,032,636	+				-0.7
3,032,636	+				+1.3
3,032,637	-				+0.0
3,032,637	-				-0.3
3,032,638	+				+0.7
3,032,638	+				-0.5
3,032,638	+				+0.3
3,032,671	+				-0.7
3,032,672	-				-1.8
3,032,672	-				+0.7
3,032,678	-				-0.5
3,032,678	-				-0.5
3,032,711	+				-0.3
3,032,750	+		Sama_2523	0.18	+0.3
3,032,751	-		Sama_2523	0.19	-0.7
3,032,888	+		Sama_2523	0.73	+0.2
3,032,888	+		Sama_2523	0.73	-0.3
3,032,888	+		Sama_2523	0.73	+0.4
3,032,888	+		Sama_2523	0.73	+0.5
3,032,889	-		Sama_2523	0.73	+0.9
3,032,889	-		Sama_2523	0.73	-1.4
3,032,889	-		Sama_2523	0.73	+1.3
3,032,889	-		Sama_2523	0.73	-0.1
3,032,889	-		Sama_2523	0.73	-0.3
3,032,889	-		Sama_2523	0.73	+0.2
3,032,889	-		Sama_2523	0.73	+0.3
3,032,889	-		Sama_2523	0.73	+0.3
3,032,889	-		Sama_2523	0.73	-0.3
3,032,898	-		Sama_2523	0.77	-1.2
3,032,898	-		Sama_2523	0.77	-0.0
3,032,934	+				+1.4
3,032,954	-				+0.7
3,032,954	-				+0.5
3,033,065	-				-1.0
3,033,065	-				+1.7
3,033,161	-		Sama_2524	0.12	-0.5
3,033,194	-		Sama_2524	0.14	-1.0
3,033,194	-		Sama_2524	0.14	+0.7
3,033,284	+		Sama_2524	0.21	+0.5
3,033,386	+		Sama_2524	0.28	+1.1
3,033,387	-		Sama_2524	0.28	-0.1
3,033,387	-		Sama_2524	0.28	-0.7
3,033,427	-		Sama_2524	0.31	+0.1
3,033,482	-		Sama_2524	0.34	+0.7
3,033,482	-		Sama_2524	0.34	+0.9
3,033,497	+		Sama_2524	0.35	+0.1
3,033,498	-		Sama_2524	0.36	+0.2
3,033,498	-		Sama_2524	0.36	+0.2
3,033,498	-		Sama_2524	0.36	+0.3
3,033,498	-		Sama_2524	0.36	-0.7
3,033,505	+		Sama_2524	0.36	+1.0