Experiment: LB rep2 t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslO and Sama_0167 are separated by 15 nucleotides Sama_0167 and Sama_0168 are separated by 271 nucleotides Sama_0168 and Sama_0169 are separated by 26 nucleotides
Sama_0166: hslO - Hsp33-like chaperonin (RefSeq), at 195,721 to 196,605
hslO
Sama_0167: Sama_0167 - heat shock protein 15 (RefSeq), at 196,621 to 197,025
_0167
Sama_0168: Sama_0168 - general secretion pathway protein C (RefSeq), at 197,297 to 198,220
_0168
Sama_0169: Sama_0169 - type II and III secretion system protein (RefSeq), at 198,247 to 200,358
_0169
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 196.344 kb on + strand, within hslO at 196.344 kb on + strand, within hslO at 196.344 kb on + strand, within hslO at 196.345 kb on - strand, within hslO at 196.345 kb on - strand, within hslO at 196.345 kb on - strand, within hslO at 196.484 kb on + strand, within hslO at 196.484 kb on + strand, within hslO at 196.484 kb on + strand, within hslO at 196.511 kb on + strand, within hslO at 196.511 kb on + strand, within hslO at 196.565 kb on + strand at 196.565 kb on + strand at 196.566 kb on - strand at 196.566 kb on - strand at 196.566 kb on - strand at 196.571 kb on + strand at 196.572 kb on - strand at 196.573 kb on + strand at 196.573 kb on + strand at 196.573 kb on + strand at 196.574 kb on - strand at 196.574 kb on - strand at 196.574 kb on - strand at 196.625 kb on + strand at 196.669 kb on - strand, within Sama_0167 at 196.669 kb on - strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.702 kb on + strand, within Sama_0167 at 196.703 kb on - strand, within Sama_0167 at 196.703 kb on - strand, within Sama_0167 at 196.703 kb on - strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.704 kb on + strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.705 kb on - strand, within Sama_0167 at 196.744 kb on + strand, within Sama_0167 at 196.744 kb on + strand, within Sama_0167 at 196.744 kb on + strand, within Sama_0167 at 196.745 kb on - strand, within Sama_0167 at 196.766 kb on + strand, within Sama_0167 at 196.766 kb on + strand, within Sama_0167 at 196.767 kb on - strand, within Sama_0167 at 196.767 kb on - strand, within Sama_0167 at 196.838 kb on + strand, within Sama_0167 at 196.838 kb on + strand, within Sama_0167 at 196.849 kb on + strand, within Sama_0167 at 196.849 kb on + strand, within Sama_0167 at 196.849 kb on + strand, within Sama_0167 at 196.849 kb on + strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.850 kb on - strand, within Sama_0167 at 196.854 kb on + strand, within Sama_0167 at 196.854 kb on + strand, within Sama_0167 at 196.854 kb on + strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.855 kb on - strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.907 kb on + strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.908 kb on - strand, within Sama_0167 at 196.912 kb on + strand, within Sama_0167 at 196.912 kb on + strand, within Sama_0167 at 196.912 kb on + strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.913 kb on - strand, within Sama_0167 at 196.918 kb on - strand, within Sama_0167 at 196.958 kb on + strand, within Sama_0167 at 196.958 kb on + strand, within Sama_0167 at 196.959 kb on - strand, within Sama_0167 at 196.984 kb on - strand, within Sama_0167 at 196.984 kb on - strand, within Sama_0167 at 197.005 kb on + strand at 197.005 kb on + strand at 197.006 kb on - strand at 197.025 kb on + strand at 197.025 kb on + strand at 197.025 kb on + strand at 197.025 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.054 kb on + strand at 197.055 kb on - strand at 197.055 kb on - strand at 197.055 kb on - strand at 197.055 kb on - strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.058 kb on + strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.059 kb on - strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.060 kb on + strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.061 kb on - strand at 197.064 kb on - strand at 197.064 kb on + strand at 197.064 kb on + strand at 197.106 kb on + strand at 197.107 kb on - strand at 197.162 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.167 kb on + strand at 197.168 kb on - strand at 197.168 kb on - strand at 197.168 kb on - strand at 197.168 kb on - strand at 197.200 kb on + strand at 197.279 kb on + strand at 197.291 kb on + strand at 197.292 kb on - strand at 197.512 kb on + strand, within Sama_0168 at 197.512 kb on + strand, within Sama_0168 at 197.513 kb on - strand, within Sama_0168 at 197.691 kb on - strand, within Sama_0168 at 197.808 kb on - strand, within Sama_0168 at 197.808 kb on - strand, within Sama_0168 at 197.824 kb on + strand, within Sama_0168 at 197.824 kb on + strand, within Sama_0168 at 197.835 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 197.966 kb on + strand, within Sama_0168 at 198.171 kb on + strand at 198.171 kb on + strand at 198.171 kb on + strand at 198.171 kb on + strand at 198.218 kb on + strand at 198.230 kb on + strand at 198.240 kb on + strand at 198.240 kb on + strand at 198.241 kb on - strand at 198.241 kb on - strand at 198.245 kb on - strand at 198.297 kb on + strand at 198.390 kb on + strand at 198.391 kb on - strand at 198.488 kb on - strand, within Sama_0169 at 198.520 kb on + strand, within Sama_0169 at 198.521 kb on - strand, within Sama_0169 at 198.661 kb on + strand, within Sama_0169 at 198.662 kb on - strand, within Sama_0169 at 198.735 kb on + strand, within Sama_0169 at 198.739 kb on + strand, within Sama_0169 at 198.740 kb on - strand, within Sama_0169 at 198.816 kb on - strand, within Sama_0169 at 198.816 kb on - strand, within Sama_0169 at 198.819 kb on + strand, within Sama_0169 at 198.966 kb on + strand, within Sama_0169 at 198.967 kb on - strand, within Sama_0169 at 198.969 kb on + strand, within Sama_0169 at 199.075 kb on + strand, within Sama_0169 at 199.197 kb on + strand, within Sama_0169
Per-strain Table
Position Strand Gene LocusTag Fraction LB rep2 t2 remove 196,344 + hslO Sama_0166 0.70 -1.0 196,344 + hslO Sama_0166 0.70 -0.2 196,344 + hslO Sama_0166 0.70 -0.8 196,345 - hslO Sama_0166 0.71 -0.6 196,345 - hslO Sama_0166 0.71 -0.6 196,345 - hslO Sama_0166 0.71 +1.4 196,484 + hslO Sama_0166 0.86 -1.0 196,484 + hslO Sama_0166 0.86 -0.8 196,484 + hslO Sama_0166 0.86 +0.7 196,511 + hslO Sama_0166 0.89 +0.8 196,511 + hslO Sama_0166 0.89 -0.9 196,565 + -3.4 196,565 + +0.8 196,566 - -1.1 196,566 - -1.2 196,566 - -1.9 196,571 + -0.2 196,572 - -1.2 196,573 + -1.0 196,573 + +0.4 196,573 + -1.8 196,574 - -1.8 196,574 - -0.8 196,574 - -2.5 196,625 + -1.2 196,669 - Sama_0167 0.12 -1.0 196,669 - Sama_0167 0.12 +0.3 196,702 + Sama_0167 0.20 -0.2 196,702 + Sama_0167 0.20 -0.4 196,702 + Sama_0167 0.20 -0.2 196,702 + Sama_0167 0.20 -0.2 196,702 + Sama_0167 0.20 -0.2 196,702 + Sama_0167 0.20 +0.2 196,703 - Sama_0167 0.20 +0.4 196,703 - Sama_0167 0.20 +0.2 196,703 - Sama_0167 0.20 +0.2 196,704 + Sama_0167 0.20 +0.1 196,704 + Sama_0167 0.20 +0.2 196,704 + Sama_0167 0.20 +0.5 196,704 + Sama_0167 0.20 -0.7 196,704 + Sama_0167 0.20 -0.2 196,705 - Sama_0167 0.21 -1.9 196,705 - Sama_0167 0.21 +1.8 196,705 - Sama_0167 0.21 -0.3 196,705 - Sama_0167 0.21 +0.2 196,705 - Sama_0167 0.21 -0.1 196,705 - Sama_0167 0.21 -0.2 196,705 - Sama_0167 0.21 +0.1 196,705 - Sama_0167 0.21 +0.8 196,705 - Sama_0167 0.21 +1.2 196,705 - Sama_0167 0.21 -0.7 196,744 + Sama_0167 0.30 -0.2 196,744 + Sama_0167 0.30 +0.6 196,744 + Sama_0167 0.30 -0.5 196,745 - Sama_0167 0.31 +0.6 196,766 + Sama_0167 0.36 +0.2 196,766 + Sama_0167 0.36 -0.0 196,767 - Sama_0167 0.36 -0.5 196,767 - Sama_0167 0.36 -1.5 196,838 + Sama_0167 0.54 -0.8 196,838 + Sama_0167 0.54 -0.2 196,849 + Sama_0167 0.56 +1.4 196,849 + Sama_0167 0.56 -0.4 196,849 + Sama_0167 0.56 +0.2 196,849 + Sama_0167 0.56 -0.7 196,850 - Sama_0167 0.57 +1.1 196,850 - Sama_0167 0.57 +0.4 196,850 - Sama_0167 0.57 +0.5 196,850 - Sama_0167 0.57 +0.8 196,850 - Sama_0167 0.57 +0.4 196,850 - Sama_0167 0.57 -0.2 196,850 - Sama_0167 0.57 -0.2 196,854 + Sama_0167 0.58 -0.6 196,854 + Sama_0167 0.58 +0.2 196,854 + Sama_0167 0.58 -1.2 196,855 - Sama_0167 0.58 +1.0 196,855 - Sama_0167 0.58 +0.0 196,855 - Sama_0167 0.58 +0.4 196,855 - Sama_0167 0.58 +1.8 196,855 - Sama_0167 0.58 +0.9 196,907 + Sama_0167 0.71 +0.8 196,907 + Sama_0167 0.71 -0.2 196,907 + Sama_0167 0.71 +0.3 196,907 + Sama_0167 0.71 +0.5 196,907 + Sama_0167 0.71 -0.4 196,907 + Sama_0167 0.71 +0.0 196,907 + Sama_0167 0.71 -1.2 196,907 + Sama_0167 0.71 -0.5 196,907 + Sama_0167 0.71 -0.9 196,907 + Sama_0167 0.71 +0.4 196,907 + Sama_0167 0.71 -0.4 196,907 + Sama_0167 0.71 -0.2 196,908 - Sama_0167 0.71 +0.3 196,908 - Sama_0167 0.71 +2.1 196,908 - Sama_0167 0.71 +0.2 196,908 - Sama_0167 0.71 -0.6 196,908 - Sama_0167 0.71 -0.9 196,908 - Sama_0167 0.71 -0.3 196,912 + Sama_0167 0.72 -0.2 196,912 + Sama_0167 0.72 -1.8 196,912 + Sama_0167 0.72 -0.9 196,913 - Sama_0167 0.72 +0.2 196,913 - Sama_0167 0.72 +0.3 196,913 - Sama_0167 0.72 +0.1 196,913 - Sama_0167 0.72 -0.2 196,913 - Sama_0167 0.72 +1.4 196,913 - Sama_0167 0.72 +0.8 196,913 - Sama_0167 0.72 +0.8 196,918 - Sama_0167 0.73 -2.5 196,958 + Sama_0167 0.83 -1.0 196,958 + Sama_0167 0.83 -1.2 196,959 - Sama_0167 0.83 -0.5 196,984 - Sama_0167 0.90 +0.3 196,984 - Sama_0167 0.90 +1.2 197,005 + +0.1 197,005 + -2.2 197,006 - -0.2 197,025 + +0.2 197,025 + +0.7 197,025 + +0.0 197,025 + -1.2 197,054 + -1.2 197,054 + -0.5 197,054 + -0.0 197,054 + -0.2 197,054 + -0.2 197,054 + -0.6 197,055 - +0.2 197,055 - +0.5 197,055 - -0.3 197,055 - -0.7 197,058 + -1.2 197,058 + -0.2 197,058 + -0.8 197,058 + +0.1 197,058 + +0.8 197,058 + -0.2 197,058 + +0.1 197,058 + +0.4 197,058 + -0.0 197,058 + -0.7 197,058 + +1.1 197,059 - +0.1 197,059 - -1.0 197,059 - +0.2 197,059 - -0.3 197,059 - +0.2 197,059 - +0.0 197,059 - +0.8 197,059 - -0.8 197,059 - -0.6 197,059 - +0.6 197,059 - +0.7 197,059 - +0.4 197,059 - +3.0 197,059 - -0.2 197,059 - +0.1 197,059 - +2.1 197,059 - -0.0 197,060 + -0.2 197,060 + +0.1 197,060 + +0.1 197,060 + +0.6 197,060 + +0.5 197,060 + -0.0 197,060 + -0.4 197,060 + -0.6 197,060 + +0.6 197,060 + -0.5 197,060 + +0.8 197,060 + -0.8 197,060 + -0.6 197,060 + +0.4 197,060 + -0.7 197,060 + +0.8 197,060 + -0.7 197,060 + +0.4 197,060 + +0.8 197,060 + -0.7 197,060 + -0.5 197,060 + +0.7 197,060 + -0.5 197,060 + +0.8 197,060 + -0.0 197,060 + -0.2 197,060 + -0.8 197,060 + -0.6 197,060 + +0.1 197,061 - +0.7 197,061 - -0.5 197,061 - -0.5 197,061 - -0.3 197,061 - +0.1 197,061 - +0.2 197,061 - +0.4 197,061 - -0.6 197,061 - +0.5 197,061 - +1.4 197,061 - +1.7 197,061 - -0.7 197,061 - -0.2 197,061 - -0.1 197,061 - -0.2 197,061 - +0.7 197,061 - +0.8 197,061 - +0.9 197,061 - +0.8 197,061 - +0.2 197,061 - +2.1 197,061 - +0.1 197,061 - +0.2 197,061 - -1.2 197,061 - -1.6 197,061 - +0.3 197,061 - +0.5 197,061 - -0.3 197,061 - +0.4 197,061 - +0.8 197,061 - -0.6 197,061 - +0.8 197,061 - +0.7 197,061 - -0.5 197,061 - -0.5 197,061 - +0.1 197,061 - -0.8 197,064 - +0.8 197,064 + -0.5 197,064 + -1.6 197,106 + -2.2 197,107 - +1.4 197,162 + +0.3 197,167 + +0.0 197,167 + +0.7 197,167 + +0.5 197,167 + +0.8 197,167 + +2.4 197,167 + -0.3 197,167 + -0.2 197,167 + +0.5 197,167 + -0.5 197,167 + -0.4 197,168 - +1.8 197,168 - -0.4 197,168 - +0.3 197,168 - -1.8 197,200 + -0.5 197,279 + -0.5 197,291 + -0.4 197,292 - -0.9 197,512 + Sama_0168 0.23 -3.5 197,512 + Sama_0168 0.23 -2.5 197,513 - Sama_0168 0.23 -2.2 197,691 - Sama_0168 0.43 -1.8 197,808 - Sama_0168 0.55 -1.2 197,808 - Sama_0168 0.55 -2.8 197,824 + Sama_0168 0.57 +0.6 197,824 + Sama_0168 0.57 -0.4 197,835 + Sama_0168 0.58 -0.1 197,966 + Sama_0168 0.72 +1.3 197,966 + Sama_0168 0.72 +0.2 197,966 + Sama_0168 0.72 -0.1 197,966 + Sama_0168 0.72 -0.7 197,966 + Sama_0168 0.72 -0.9 198,171 + -0.2 198,171 + +0.2 198,171 + +0.7 198,171 + +0.4 198,218 + +0.7 198,230 + +0.4 198,240 + +0.8 198,240 + +0.4 198,241 - -0.8 198,241 - -0.2 198,245 - -1.8 198,297 + -1.8 198,390 + -2.2 198,391 - -0.8 198,488 - Sama_0169 0.11 -2.5 198,520 + Sama_0169 0.13 -0.8 198,521 - Sama_0169 0.13 -1.8 198,661 + Sama_0169 0.20 +0.4 198,662 - Sama_0169 0.20 -2.8 198,735 + Sama_0169 0.23 -1.2 198,739 + Sama_0169 0.23 -1.2 198,740 - Sama_0169 0.23 -0.6 198,816 - Sama_0169 0.27 -1.2 198,816 - Sama_0169 0.27 +0.8 198,819 + Sama_0169 0.27 -2.0 198,966 + Sama_0169 0.34 -0.9 198,967 - Sama_0169 0.34 -1.8 198,969 + Sama_0169 0.34 -2.5 199,075 + Sama_0169 0.39 -1.8 199,197 + Sama_0169 0.45 -0.5
Or see this region's nucleotide sequence