Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_671 and HP15_672 overlap by 8 nucleotides HP15_672 and HP15_673 are separated by 3 nucleotides HP15_673 and HP15_674 overlap by 11 nucleotides HP15_674 and HP15_675 are separated by 117 nucleotides
HP15_671: HP15_671 - phage portal protein, lambda family, at 690,569 to 692,146
_671
HP15_672: HP15_672 - conserved hypothetical protein, at 692,139 to 692,681
_672
HP15_673: HP15_673 - phage terminase GpA, at 692,685 to 694,646
_673
HP15_674: HP15_674 - phage-related packaging protein, at 694,636 to 695,154
_674
HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703
_675
Position (kb) 692
693
694
695 Strain fitness (log2 ratio) -1
0
1
2 at 691.827 kb on + strand, within HP15_671 at 691.827 kb on + strand, within HP15_671 at 691.827 kb on + strand, within HP15_671 at 691.891 kb on - strand, within HP15_671 at 691.972 kb on + strand, within HP15_671 at 692.019 kb on + strand at 692.019 kb on + strand at 692.027 kb on - strand at 692.027 kb on - strand at 692.092 kb on + strand at 692.150 kb on + strand at 692.157 kb on - strand at 692.204 kb on - strand, within HP15_672 at 692.284 kb on - strand, within HP15_672 at 692.301 kb on + strand, within HP15_672 at 692.309 kb on - strand, within HP15_672 at 692.503 kb on + strand, within HP15_672 at 692.503 kb on + strand, within HP15_672 at 692.506 kb on - strand, within HP15_672 at 692.540 kb on - strand, within HP15_672 at 692.540 kb on - strand, within HP15_672 at 692.595 kb on - strand, within HP15_672 at 692.848 kb on + strand at 692.856 kb on - strand at 692.856 kb on - strand at 692.856 kb on - strand at 692.970 kb on - strand, within HP15_673 at 693.044 kb on + strand, within HP15_673 at 693.052 kb on - strand, within HP15_673 at 693.270 kb on - strand, within HP15_673 at 693.320 kb on - strand, within HP15_673 at 693.399 kb on + strand, within HP15_673 at 693.421 kb on + strand, within HP15_673 at 693.431 kb on + strand, within HP15_673 at 693.441 kb on + strand, within HP15_673 at 693.449 kb on - strand, within HP15_673 at 693.554 kb on + strand, within HP15_673 at 693.554 kb on + strand, within HP15_673 at 693.654 kb on + strand, within HP15_673 at 693.696 kb on - strand, within HP15_673 at 693.696 kb on - strand, within HP15_673 at 693.905 kb on - strand, within HP15_673 at 693.921 kb on - strand, within HP15_673 at 693.957 kb on - strand, within HP15_673 at 694.022 kb on + strand, within HP15_673 at 694.105 kb on + strand, within HP15_673 at 694.113 kb on - strand, within HP15_673 at 694.113 kb on - strand, within HP15_673 at 694.166 kb on - strand, within HP15_673 at 694.186 kb on + strand, within HP15_673 at 694.219 kb on - strand, within HP15_673 at 694.258 kb on - strand, within HP15_673 at 694.387 kb on + strand, within HP15_673 at 694.405 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.410 kb on - strand, within HP15_673 at 694.461 kb on - strand at 694.480 kb on + strand at 694.546 kb on + strand at 694.546 kb on + strand at 694.549 kb on - strand at 694.554 kb on - strand at 694.554 kb on - strand at 694.556 kb on + strand at 694.641 kb on - strand at 694.666 kb on - strand at 694.728 kb on - strand, within HP15_674 at 694.730 kb on + strand, within HP15_674 at 694.745 kb on + strand, within HP15_674 at 694.749 kb on - strand, within HP15_674 at 694.826 kb on + strand, within HP15_674 at 694.834 kb on - strand, within HP15_674 at 694.961 kb on + strand, within HP15_674 at 695.043 kb on - strand, within HP15_674 at 695.123 kb on - strand at 695.128 kb on - strand at 695.143 kb on - strand at 695.167 kb on - strand at 695.227 kb on + strand at 695.233 kb on + strand at 695.233 kb on - strand at 695.250 kb on - strand at 695.271 kb on + strand at 695.320 kb on - strand, within HP15_675 at 695.322 kb on + strand, within HP15_675 at 695.426 kb on - strand, within HP15_675 at 695.532 kb on + strand, within HP15_675 at 695.537 kb on + strand, within HP15_675 at 695.571 kb on - strand, within HP15_675 at 695.603 kb on + strand, within HP15_675 at 695.609 kb on + strand, within HP15_675 at 695.617 kb on - strand, within HP15_675
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 691,827 + HP15_671 0.80 -0.2 691,827 + HP15_671 0.80 -0.6 691,827 + HP15_671 0.80 -0.1 691,891 - HP15_671 0.84 +0.5 691,972 + HP15_671 0.89 +1.4 692,019 + -0.4 692,019 + +0.8 692,027 - +0.5 692,027 - -0.3 692,092 + +0.2 692,150 + +0.4 692,157 - -0.0 692,204 - HP15_672 0.12 +0.3 692,284 - HP15_672 0.27 -0.2 692,301 + HP15_672 0.30 -0.2 692,309 - HP15_672 0.31 +1.0 692,503 + HP15_672 0.67 +0.3 692,503 + HP15_672 0.67 +0.2 692,506 - HP15_672 0.68 -0.5 692,540 - HP15_672 0.74 -0.4 692,540 - HP15_672 0.74 +0.7 692,595 - HP15_672 0.84 +0.1 692,848 + -0.4 692,856 - -0.0 692,856 - -0.1 692,856 - +0.4 692,970 - HP15_673 0.15 +0.2 693,044 + HP15_673 0.18 -0.3 693,052 - HP15_673 0.19 +0.9 693,270 - HP15_673 0.30 -0.4 693,320 - HP15_673 0.32 +1.3 693,399 + HP15_673 0.36 +0.0 693,421 + HP15_673 0.38 +0.3 693,431 + HP15_673 0.38 +0.4 693,441 + HP15_673 0.39 +0.9 693,449 - HP15_673 0.39 -0.6 693,554 + HP15_673 0.44 -0.5 693,554 + HP15_673 0.44 -0.5 693,654 + HP15_673 0.49 -0.6 693,696 - HP15_673 0.52 +0.5 693,696 - HP15_673 0.52 +0.3 693,905 - HP15_673 0.62 -1.5 693,921 - HP15_673 0.63 +1.3 693,957 - HP15_673 0.65 +0.5 694,022 + HP15_673 0.68 +0.1 694,105 + HP15_673 0.72 -0.4 694,113 - HP15_673 0.73 +0.5 694,113 - HP15_673 0.73 +0.2 694,166 - HP15_673 0.75 -0.9 694,186 + HP15_673 0.77 +2.4 694,219 - HP15_673 0.78 +1.2 694,258 - HP15_673 0.80 -0.4 694,387 + HP15_673 0.87 -1.0 694,405 - HP15_673 0.88 -0.3 694,410 - HP15_673 0.88 +0.2 694,410 - HP15_673 0.88 -0.0 694,410 - HP15_673 0.88 +1.9 694,461 - +0.1 694,480 + -1.0 694,546 + -0.8 694,546 + +0.7 694,549 - -0.0 694,554 - +0.3 694,554 - +0.5 694,556 + -0.5 694,641 - +0.4 694,666 - -0.4 694,728 - HP15_674 0.18 +0.1 694,730 + HP15_674 0.18 +1.0 694,745 + HP15_674 0.21 +1.7 694,749 - HP15_674 0.22 +2.0 694,826 + HP15_674 0.37 +0.8 694,834 - HP15_674 0.38 +0.8 694,961 + HP15_674 0.63 +0.5 695,043 - HP15_674 0.78 -0.0 695,123 - +0.2 695,128 - +0.5 695,143 - +0.3 695,167 - -0.0 695,227 + -0.3 695,233 + -0.4 695,233 - -0.6 695,250 - +0.5 695,271 + +0.6 695,320 - HP15_675 0.11 -0.1 695,322 + HP15_675 0.12 -0.0 695,426 - HP15_675 0.36 -1.0 695,532 + HP15_675 0.60 +0.0 695,537 + HP15_675 0.61 +0.6 695,571 - HP15_675 0.69 -0.0 695,603 + HP15_675 0.77 -0.2 695,609 + HP15_675 0.78 +1.0 695,617 - HP15_675 0.80 +0.7
Or see this region's nucleotide sequence