Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_56 and HP15_57 are separated by 32 nucleotides HP15_57 and HP15_58 are separated by 45 nucleotides HP15_58 and HP15_59 are separated by 91 nucleotides HP15_59 and HP15_60 are separated by 13 nucleotides
HP15_56: HP15_56 - acyl-CoA dehydrogenase domain protein, at 61,337 to 62,461
_56
HP15_57: HP15_57 - conserved hypothetical protein, at 62,494 to 63,393
_57
HP15_58: HP15_58 - GTP cyclohydrolase 1, at 63,439 to 64,068
_58
HP15_59: HP15_59 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 64,160 to 64,906
_59
HP15_60: HP15_60 - transcription regulator, AsnC-type, at 64,920 to 65,507
_60
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.481 kb on + strand at 62.487 kb on - strand at 62.516 kb on - strand at 62.536 kb on - strand at 62.577 kb on - strand at 62.590 kb on - strand, within HP15_57 at 62.649 kb on - strand, within HP15_57 at 62.654 kb on - strand, within HP15_57 at 62.656 kb on + strand, within HP15_57 at 62.666 kb on + strand, within HP15_57 at 62.682 kb on + strand, within HP15_57 at 62.786 kb on + strand, within HP15_57 at 62.799 kb on - strand, within HP15_57 at 62.837 kb on + strand, within HP15_57 at 62.837 kb on + strand, within HP15_57 at 62.873 kb on - strand, within HP15_57 at 62.888 kb on - strand, within HP15_57 at 62.920 kb on - strand, within HP15_57 at 63.140 kb on + strand, within HP15_57 at 63.201 kb on + strand, within HP15_57 at 63.313 kb on - strand at 63.343 kb on - strand at 63.461 kb on - strand at 63.479 kb on + strand at 63.505 kb on + strand, within HP15_58 at 63.569 kb on - strand, within HP15_58 at 63.585 kb on + strand, within HP15_58 at 63.593 kb on - strand, within HP15_58 at 63.595 kb on + strand, within HP15_58 at 63.601 kb on - strand, within HP15_58 at 63.775 kb on + strand, within HP15_58 at 63.854 kb on - strand, within HP15_58 at 63.870 kb on - strand, within HP15_58 at 63.870 kb on - strand, within HP15_58 at 63.870 kb on - strand, within HP15_58 at 63.896 kb on + strand, within HP15_58 at 63.896 kb on + strand, within HP15_58 at 63.904 kb on - strand, within HP15_58 at 63.914 kb on + strand, within HP15_58 at 63.914 kb on - strand, within HP15_58 at 63.933 kb on + strand, within HP15_58 at 63.936 kb on - strand, within HP15_58 at 63.985 kb on + strand, within HP15_58 at 63.992 kb on + strand, within HP15_58 at 63.993 kb on - strand, within HP15_58 at 63.997 kb on + strand, within HP15_58 at 64.000 kb on - strand, within HP15_58 at 64.000 kb on - strand, within HP15_58 at 64.005 kb on - strand, within HP15_58 at 64.031 kb on - strand at 64.063 kb on + strand at 64.066 kb on - strand at 64.066 kb on - strand at 64.067 kb on + strand at 64.071 kb on - strand at 64.139 kb on + strand at 64.141 kb on + strand at 64.141 kb on + strand at 64.142 kb on - strand at 64.149 kb on - strand at 64.196 kb on + strand at 64.229 kb on - strand at 64.229 kb on - strand at 64.274 kb on + strand, within HP15_59 at 64.282 kb on - strand, within HP15_59 at 64.282 kb on - strand, within HP15_59 at 64.282 kb on - strand, within HP15_59 at 64.307 kb on + strand, within HP15_59 at 64.310 kb on - strand, within HP15_59 at 64.351 kb on - strand, within HP15_59 at 64.426 kb on + strand, within HP15_59 at 64.463 kb on - strand, within HP15_59 at 64.517 kb on + strand, within HP15_59 at 64.525 kb on - strand, within HP15_59 at 64.548 kb on + strand, within HP15_59 at 64.548 kb on + strand, within HP15_59 at 64.548 kb on + strand, within HP15_59 at 64.548 kb on + strand, within HP15_59 at 64.564 kb on - strand, within HP15_59 at 64.584 kb on - strand, within HP15_59 at 64.623 kb on - strand, within HP15_59 at 64.627 kb on - strand, within HP15_59 at 64.692 kb on + strand, within HP15_59 at 64.692 kb on + strand, within HP15_59 at 64.692 kb on + strand, within HP15_59 at 64.700 kb on - strand, within HP15_59 at 64.700 kb on - strand, within HP15_59 at 64.700 kb on - strand, within HP15_59 at 64.700 kb on - strand, within HP15_59 at 64.700 kb on - strand, within HP15_59 at 64.795 kb on + strand, within HP15_59 at 64.803 kb on - strand, within HP15_59 at 64.839 kb on - strand at 64.847 kb on - strand at 64.849 kb on + strand at 64.880 kb on + strand at 64.900 kb on + strand at 64.908 kb on - strand at 64.908 kb on - strand at 64.908 kb on - strand at 64.986 kb on - strand, within HP15_60 at 65.030 kb on + strand, within HP15_60 at 65.036 kb on - strand, within HP15_60
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 62,481 + +0.3 62,487 - -0.0 62,516 - -0.2 62,536 - -0.5 62,577 - +0.5 62,590 - HP15_57 0.11 -0.3 62,649 - HP15_57 0.17 -0.1 62,654 - HP15_57 0.18 +0.0 62,656 + HP15_57 0.18 -0.8 62,666 + HP15_57 0.19 -0.0 62,682 + HP15_57 0.21 +0.1 62,786 + HP15_57 0.32 -1.5 62,799 - HP15_57 0.34 -1.3 62,837 + HP15_57 0.38 +0.9 62,837 + HP15_57 0.38 -1.7 62,873 - HP15_57 0.42 -1.3 62,888 - HP15_57 0.44 +0.1 62,920 - HP15_57 0.47 -0.5 63,140 + HP15_57 0.72 -0.4 63,201 + HP15_57 0.79 -0.0 63,313 - -0.3 63,343 - +1.1 63,461 - -0.5 63,479 + +0.8 63,505 + HP15_58 0.10 -0.0 63,569 - HP15_58 0.21 -0.5 63,585 + HP15_58 0.23 +0.1 63,593 - HP15_58 0.24 +0.3 63,595 + HP15_58 0.25 -0.1 63,601 - HP15_58 0.26 +0.2 63,775 + HP15_58 0.53 +0.0 63,854 - HP15_58 0.66 +2.7 63,870 - HP15_58 0.68 -0.3 63,870 - HP15_58 0.68 -0.0 63,870 - HP15_58 0.68 +0.1 63,896 + HP15_58 0.73 -0.3 63,896 + HP15_58 0.73 -0.2 63,904 - HP15_58 0.74 +0.0 63,914 + HP15_58 0.75 +0.7 63,914 - HP15_58 0.75 +0.7 63,933 + HP15_58 0.78 +0.3 63,936 - HP15_58 0.79 -0.0 63,985 + HP15_58 0.87 +0.1 63,992 + HP15_58 0.88 -0.4 63,993 - HP15_58 0.88 -1.1 63,997 + HP15_58 0.89 -0.1 64,000 - HP15_58 0.89 +0.1 64,000 - HP15_58 0.89 -2.3 64,005 - HP15_58 0.90 +0.1 64,031 - -0.2 64,063 + +1.0 64,066 - +0.2 64,066 - -0.2 64,067 + +0.3 64,071 - +0.6 64,139 + -0.1 64,141 + +0.3 64,141 + +0.1 64,142 - -0.8 64,149 - +0.4 64,196 + +0.6 64,229 - -0.0 64,229 - -0.0 64,274 + HP15_59 0.15 -0.6 64,282 - HP15_59 0.16 -0.6 64,282 - HP15_59 0.16 +0.7 64,282 - HP15_59 0.16 +0.2 64,307 + HP15_59 0.20 +0.4 64,310 - HP15_59 0.20 -0.9 64,351 - HP15_59 0.26 +0.5 64,426 + HP15_59 0.36 +0.6 64,463 - HP15_59 0.41 +0.1 64,517 + HP15_59 0.48 -0.0 64,525 - HP15_59 0.49 -0.0 64,548 + HP15_59 0.52 +0.1 64,548 + HP15_59 0.52 +1.0 64,548 + HP15_59 0.52 +0.9 64,548 + HP15_59 0.52 +0.0 64,564 - HP15_59 0.54 -0.4 64,584 - HP15_59 0.57 -0.3 64,623 - HP15_59 0.62 +0.0 64,627 - HP15_59 0.63 +0.5 64,692 + HP15_59 0.71 +1.0 64,692 + HP15_59 0.71 -1.2 64,692 + HP15_59 0.71 +0.7 64,700 - HP15_59 0.72 +0.3 64,700 - HP15_59 0.72 +2.3 64,700 - HP15_59 0.72 +0.9 64,700 - HP15_59 0.72 +0.6 64,700 - HP15_59 0.72 +0.2 64,795 + HP15_59 0.85 -0.8 64,803 - HP15_59 0.86 +0.4 64,839 - -0.0 64,847 - +0.1 64,849 + +0.7 64,880 + +0.8 64,900 + +0.1 64,908 - +0.0 64,908 - -0.3 64,908 - +0.2 64,986 - HP15_60 0.11 -1.1 65,030 + HP15_60 0.19 +0.8 65,036 - HP15_60 0.20 -0.9
Or see this region's nucleotide sequence