Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g38

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g35 and HP15_p42g36 are separated by 4 nucleotidesHP15_p42g36 and HP15_p42g37 are separated by 168 nucleotidesHP15_p42g37 and HP15_p42g38 are separated by 18 nucleotidesHP15_p42g38 and HP15_p42g39 are separated by 13 nucleotidesHP15_p42g39 and HP15_p42g40 overlap by 4 nucleotides HP15_p42g35: HP15_p42g35 - membrane protein, at 28,138 to 28,644 _p42g35 HP15_p42g36: HP15_p42g36 - hypothetical protein, at 28,649 to 28,759 _p42g36 HP15_p42g37: HP15_p42g37 - conserved hypothetical protein, at 28,928 to 29,197 _p42g37 HP15_p42g38: HP15_p42g38 - conserved hypothetical protein, secreted, at 29,216 to 29,641 _p42g38 HP15_p42g39: HP15_p42g39 - TrbP protein, at 29,655 to 30,383 _p42g39 HP15_p42g40: HP15_p42g40 - TrbN, putative muramidase, at 30,380 to 31,015 _p42g40 Position (kb) 29 30Strain fitness (log2 ratio) -2 -1 0 1at 28.250 kb on - strand, within HP15_p42g35at 28.281 kb on + strand, within HP15_p42g35at 28.289 kb on - strand, within HP15_p42g35at 28.359 kb on - strand, within HP15_p42g35at 28.361 kb on + strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.369 kb on - strand, within HP15_p42g35at 28.414 kb on + strand, within HP15_p42g35at 28.415 kb on + strand, within HP15_p42g35at 28.415 kb on + strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.423 kb on - strand, within HP15_p42g35at 28.428 kb on + strand, within HP15_p42g35at 28.428 kb on + strand, within HP15_p42g35at 28.431 kb on - strand, within HP15_p42g35at 28.433 kb on + strand, within HP15_p42g35at 28.436 kb on - strand, within HP15_p42g35at 28.442 kb on - strand, within HP15_p42g35at 28.443 kb on - strand, within HP15_p42g35at 28.626 kb on + strandat 28.653 kb on - strandat 28.699 kb on - strand, within HP15_p42g36at 28.791 kb on - strandat 28.791 kb on - strandat 28.798 kb on + strandat 28.798 kb on + strandat 28.798 kb on - strandat 28.806 kb on - strandat 28.882 kb on + strandat 28.898 kb on + strandat 28.966 kb on - strand, within HP15_p42g37at 28.972 kb on + strand, within HP15_p42g37at 29.061 kb on + strand, within HP15_p42g37at 29.061 kb on + strand, within HP15_p42g37at 29.069 kb on - strand, within HP15_p42g37at 29.071 kb on + strand, within HP15_p42g37at 29.071 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.076 kb on + strand, within HP15_p42g37at 29.079 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.084 kb on - strand, within HP15_p42g37at 29.136 kb on + strand, within HP15_p42g37at 29.201 kb on - strandat 29.222 kb on - strandat 29.257 kb on + strandat 29.257 kb on + strandat 29.257 kb on + strandat 29.257 kb on + strandat 29.257 kb on + strandat 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.265 kb on - strand, within HP15_p42g38at 29.387 kb on - strand, within HP15_p42g38at 29.393 kb on - strand, within HP15_p42g38at 29.404 kb on - strand, within HP15_p42g38at 29.423 kb on - strand, within HP15_p42g38at 29.457 kb on - strand, within HP15_p42g38at 29.524 kb on - strand, within HP15_p42g38at 29.584 kb on - strand, within HP15_p42g38at 29.584 kb on - strand, within HP15_p42g38at 29.604 kb on - strandat 29.612 kb on + strandat 29.612 kb on + strandat 29.612 kb on + strandat 29.612 kb on + strandat 29.620 kb on - strandat 29.620 kb on - strandat 29.620 kb on - strandat 29.620 kb on - strandat 29.620 kb on - strandat 29.679 kb on + strandat 29.722 kb on - strandat 29.795 kb on - strand, within HP15_p42g39at 29.845 kb on - strand, within HP15_p42g39at 29.847 kb on + strand, within HP15_p42g39at 29.847 kb on + strand, within HP15_p42g39at 29.855 kb on + strand, within HP15_p42g39at 29.855 kb on - strand, within HP15_p42g39at 29.877 kb on + strand, within HP15_p42g39at 29.882 kb on + strand, within HP15_p42g39at 29.907 kb on - strand, within HP15_p42g39at 29.911 kb on + strand, within HP15_p42g39at 29.964 kb on + strand, within HP15_p42g39at 29.966 kb on - strand, within HP15_p42g39at 29.972 kb on - strand, within HP15_p42g39at 29.972 kb on - strand, within HP15_p42g39at 29.991 kb on - strand, within HP15_p42g39at 30.002 kb on + strand, within HP15_p42g39at 30.080 kb on - strand, within HP15_p42g39at 30.085 kb on - strand, within HP15_p42g39at 30.085 kb on - strand, within HP15_p42g39at 30.171 kb on - strand, within HP15_p42g39at 30.176 kb on - strand, within HP15_p42g39at 30.176 kb on - strand, within HP15_p42g39at 30.188 kb on - strand, within HP15_p42g39at 30.278 kb on - strand, within HP15_p42g39at 30.285 kb on - strand, within HP15_p42g39at 30.298 kb on - strand, within HP15_p42g39at 30.308 kb on - strand, within HP15_p42g39at 30.308 kb on - strand, within HP15_p42g39at 30.308 kb on - strand, within HP15_p42g39at 30.324 kb on - strandat 30.343 kb on - strandat 30.414 kb on - strandat 30.421 kb on + strandat 30.421 kb on + strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.429 kb on - strandat 30.455 kb on + strand, within HP15_p42g40at 30.455 kb on + strand, within HP15_p42g40at 30.455 kb on + strand, within HP15_p42g40at 30.455 kb on + strand, within HP15_p42g40at 30.455 kb on + strand, within HP15_p42g40at 30.463 kb on - strand, within HP15_p42g40at 30.463 kb on - strand, within HP15_p42g40at 30.463 kb on - strand, within HP15_p42g40at 30.463 kb on - strand, within HP15_p42g40at 30.568 kb on - strand, within HP15_p42g40at 30.568 kb on - strand, within HP15_p42g40at 30.595 kb on + strand, within HP15_p42g40at 30.620 kb on - strand, within HP15_p42g40at 30.629 kb on + strand, within HP15_p42g40

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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28,250 - HP15_p42g35 0.22 +0.9
28,281 + HP15_p42g35 0.28 +0.5
28,289 - HP15_p42g35 0.30 +0.8
28,359 - HP15_p42g35 0.44 +0.4
28,361 + HP15_p42g35 0.44 -1.7
28,369 - HP15_p42g35 0.46 -0.6
28,369 - HP15_p42g35 0.46 -0.0
28,369 - HP15_p42g35 0.46 +0.1
28,414 + HP15_p42g35 0.54 -0.9
28,415 + HP15_p42g35 0.55 -0.2
28,415 + HP15_p42g35 0.55 +0.7
28,423 - HP15_p42g35 0.56 -0.2
28,423 - HP15_p42g35 0.56 +0.1
28,423 - HP15_p42g35 0.56 -0.2
28,428 + HP15_p42g35 0.57 -0.2
28,428 + HP15_p42g35 0.57 +0.7
28,431 - HP15_p42g35 0.58 -0.8
28,433 + HP15_p42g35 0.58 -0.2
28,436 - HP15_p42g35 0.59 +0.2
28,442 - HP15_p42g35 0.60 +0.1
28,443 - HP15_p42g35 0.60 -1.0
28,626 + +0.0
28,653 - +0.4
28,699 - HP15_p42g36 0.45 -0.5
28,791 - -0.9
28,791 - +0.9
28,798 + -1.8
28,798 + -1.1
28,798 - -0.6
28,806 - +0.1
28,882 + -1.0
28,898 + +0.3
28,966 - HP15_p42g37 0.14 +0.0
28,972 + HP15_p42g37 0.16 +0.9
29,061 + HP15_p42g37 0.49 -1.0
29,061 + HP15_p42g37 0.49 +0.9
29,069 - HP15_p42g37 0.52 -1.3
29,071 + HP15_p42g37 0.53 +0.5
29,071 + HP15_p42g37 0.53 -0.3
29,076 + HP15_p42g37 0.55 -0.1
29,076 + HP15_p42g37 0.55 -0.1
29,076 + HP15_p42g37 0.55 +0.3
29,076 + HP15_p42g37 0.55 -0.4
29,076 + HP15_p42g37 0.55 +0.2
29,076 + HP15_p42g37 0.55 +0.8
29,076 + HP15_p42g37 0.55 +0.3
29,076 + HP15_p42g37 0.55 +0.4
29,076 + HP15_p42g37 0.55 -1.5
29,076 + HP15_p42g37 0.55 +0.7
29,076 + HP15_p42g37 0.55 -0.3
29,076 + HP15_p42g37 0.55 +0.4
29,076 + HP15_p42g37 0.55 +0.4
29,076 + HP15_p42g37 0.55 -0.9
29,076 + HP15_p42g37 0.55 +0.1
29,076 + HP15_p42g37 0.55 +0.7
29,076 + HP15_p42g37 0.55 -0.1
29,076 + HP15_p42g37 0.55 -0.3
29,079 - HP15_p42g37 0.56 -0.9
29,084 - HP15_p42g37 0.58 -1.9
29,084 - HP15_p42g37 0.58 -0.3
29,084 - HP15_p42g37 0.58 -1.2
29,084 - HP15_p42g37 0.58 +0.5
29,084 - HP15_p42g37 0.58 -1.2
29,084 - HP15_p42g37 0.58 -1.5
29,084 - HP15_p42g37 0.58 -0.7
29,084 - HP15_p42g37 0.58 -0.6
29,084 - HP15_p42g37 0.58 -1.2
29,084 - HP15_p42g37 0.58 +1.1
29,084 - HP15_p42g37 0.58 +0.5
29,084 - HP15_p42g37 0.58 -1.0
29,084 - HP15_p42g37 0.58 -0.9
29,136 + HP15_p42g37 0.77 -0.2
29,201 - -0.5
29,222 - -0.6
29,257 + +0.1
29,257 + -0.1
29,257 + -1.5
29,257 + -0.1
29,257 + +0.3
29,265 - HP15_p42g38 0.12 -1.2
29,265 - HP15_p42g38 0.12 -0.1
29,265 - HP15_p42g38 0.12 +0.2
29,265 - HP15_p42g38 0.12 -0.7
29,265 - HP15_p42g38 0.12 -1.2
29,265 - HP15_p42g38 0.12 +0.8
29,265 - HP15_p42g38 0.12 +0.4
29,265 - HP15_p42g38 0.12 -1.2
29,265 - HP15_p42g38 0.12 +1.1
29,265 - HP15_p42g38 0.12 -1.6
29,265 - HP15_p42g38 0.12 -0.6
29,387 - HP15_p42g38 0.40 -1.5
29,393 - HP15_p42g38 0.42 +0.4
29,404 - HP15_p42g38 0.44 -0.2
29,423 - HP15_p42g38 0.49 -0.7
29,457 - HP15_p42g38 0.57 -1.1
29,524 - HP15_p42g38 0.72 -1.1
29,584 - HP15_p42g38 0.86 -0.2
29,584 - HP15_p42g38 0.86 -0.1
29,604 - -0.4
29,612 + +0.3
29,612 + +0.0
29,612 + +0.4
29,612 + +0.3
29,620 - -0.4
29,620 - -0.7
29,620 - -2.0
29,620 - -0.1
29,620 - -0.3
29,679 + -0.2
29,722 - -0.5
29,795 - HP15_p42g39 0.19 -1.1
29,845 - HP15_p42g39 0.26 -0.3
29,847 + HP15_p42g39 0.26 +0.4
29,847 + HP15_p42g39 0.26 -0.9
29,855 + HP15_p42g39 0.27 -0.4
29,855 - HP15_p42g39 0.27 -0.1
29,877 + HP15_p42g39 0.30 -0.2
29,882 + HP15_p42g39 0.31 -1.1
29,907 - HP15_p42g39 0.35 -0.8
29,911 + HP15_p42g39 0.35 -0.1
29,964 + HP15_p42g39 0.42 +0.2
29,966 - HP15_p42g39 0.43 -1.4
29,972 - HP15_p42g39 0.43 -0.9
29,972 - HP15_p42g39 0.43 +0.3
29,991 - HP15_p42g39 0.46 -0.8
30,002 + HP15_p42g39 0.48 +1.7
30,080 - HP15_p42g39 0.58 -1.0
30,085 - HP15_p42g39 0.59 -0.4
30,085 - HP15_p42g39 0.59 -0.1
30,171 - HP15_p42g39 0.71 -0.7
30,176 - HP15_p42g39 0.71 -0.4
30,176 - HP15_p42g39 0.71 -2.1
30,188 - HP15_p42g39 0.73 +0.8
30,278 - HP15_p42g39 0.85 -0.1
30,285 - HP15_p42g39 0.86 -0.0
30,298 - HP15_p42g39 0.88 +0.2
30,308 - HP15_p42g39 0.90 -0.5
30,308 - HP15_p42g39 0.90 +0.2
30,308 - HP15_p42g39 0.90 +0.0
30,324 - -0.1
30,343 - -0.5
30,414 - -1.2
30,421 + +1.7
30,421 + +0.1
30,429 - -0.2
30,429 - -0.1
30,429 - -0.9
30,455 + HP15_p42g40 0.12 +0.1
30,455 + HP15_p42g40 0.12 +0.4
30,455 + HP15_p42g40 0.12 +0.4
30,455 + HP15_p42g40 0.12 +0.4
30,455 + HP15_p42g40 0.12 -1.0
30,463 - HP15_p42g40 0.13 -0.5
30,463 - HP15_p42g40 0.13 -1.2
30,463 - HP15_p42g40 0.13 +0.4
30,463 - HP15_p42g40 0.13 +0.3
30,568 - HP15_p42g40 0.30 +0.3
30,568 - HP15_p42g40 0.30 -1.3
30,595 + HP15_p42g40 0.34 -0.7
30,620 - HP15_p42g40 0.38 -0.0
30,629 + HP15_p42g40 0.39 -0.6

Or see this region's nucleotide sequence