Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4318

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4317 and Psest_4318 are separated by 97 nucleotidesPsest_4318 and Psest_4319 are separated by 6 nucleotidesPsest_4319 and Psest_4320 are separated by 258 nucleotides Psest_4317: Psest_4317 - zinc-binding alcohol dehydrogenase family protein, at 4,517,162 to 4,518,145 _4317 Psest_4318: Psest_4318 - Predicted dioxygenase of extradiol dioxygenase family, at 4,518,243 to 4,518,668 _4318 Psest_4319: Psest_4319 - Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily, at 4,518,675 to 4,519,211 _4319 Psest_4320: Psest_4320 - Zn-dependent oligopeptidases, at 4,519,470 to 4,521,521 _4320 Position (kb) 4518 4519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4517.359 kb on - strand, within Psest_4317at 4517.374 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.463 kb on + strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.464 kb on - strand, within Psest_4317at 4517.581 kb on - strand, within Psest_4317at 4517.620 kb on + strand, within Psest_4317at 4517.621 kb on - strand, within Psest_4317at 4517.643 kb on + strand, within Psest_4317at 4517.644 kb on - strand, within Psest_4317at 4517.781 kb on + strand, within Psest_4317at 4517.781 kb on + strand, within Psest_4317at 4517.781 kb on + strand, within Psest_4317at 4517.782 kb on - strand, within Psest_4317at 4517.782 kb on - strand, within Psest_4317at 4517.859 kb on + strand, within Psest_4317at 4517.860 kb on - strand, within Psest_4317at 4518.122 kb on + strandat 4518.207 kb on + strandat 4518.207 kb on + strandat 4518.208 kb on - strandat 4518.208 kb on - strandat 4518.242 kb on + strandat 4518.242 kb on + strandat 4518.242 kb on + strandat 4518.242 kb on + strandat 4518.242 kb on + strandat 4518.242 kb on + strandat 4518.243 kb on - strandat 4518.243 kb on - strandat 4518.243 kb on - strandat 4518.243 kb on - strandat 4518.243 kb on - strandat 4518.243 kb on - strandat 4518.243 kb on - strandat 4518.243 kb on - strandat 4518.306 kb on + strand, within Psest_4318at 4518.306 kb on + strand, within Psest_4318at 4518.307 kb on - strand, within Psest_4318at 4518.382 kb on + strand, within Psest_4318at 4518.383 kb on - strand, within Psest_4318at 4518.383 kb on - strand, within Psest_4318at 4518.383 kb on - strand, within Psest_4318at 4518.455 kb on - strand, within Psest_4318at 4518.552 kb on + strand, within Psest_4318at 4518.552 kb on + strand, within Psest_4318at 4518.552 kb on + strand, within Psest_4318at 4518.553 kb on - strand, within Psest_4318at 4518.715 kb on + strandat 4518.715 kb on + strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.716 kb on - strandat 4518.730 kb on + strand, within Psest_4319at 4518.731 kb on - strand, within Psest_4319at 4518.731 kb on - strand, within Psest_4319at 4518.793 kb on + strand, within Psest_4319at 4518.793 kb on + strand, within Psest_4319at 4518.793 kb on + strand, within Psest_4319at 4518.793 kb on + strand, within Psest_4319at 4518.793 kb on + strand, within Psest_4319at 4518.793 kb on + strand, within Psest_4319at 4518.793 kb on + strand, within Psest_4319at 4518.794 kb on - strand, within Psest_4319at 4518.997 kb on + strand, within Psest_4319at 4519.214 kb on + strandat 4519.215 kb on - strandat 4519.215 kb on - strandat 4519.248 kb on + strandat 4519.248 kb on + strandat 4519.248 kb on + strandat 4519.248 kb on + strandat 4519.248 kb on + strandat 4519.248 kb on + strandat 4519.249 kb on - strandat 4519.249 kb on - strandat 4519.249 kb on - strandat 4519.252 kb on + strandat 4519.252 kb on + strandat 4519.252 kb on + strandat 4519.252 kb on + strandat 4519.252 kb on + strandat 4519.252 kb on + strandat 4519.252 kb on + strandat 4519.252 kb on + strandat 4519.253 kb on - strandat 4519.253 kb on - strandat 4519.253 kb on - strandat 4519.317 kb on + strandat 4519.321 kb on + strandat 4519.388 kb on + strandat 4519.388 kb on + strandat 4519.388 kb on + strandat 4519.389 kb on - strandat 4519.389 kb on - strandat 4519.516 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,517,359 - Psest_4317 0.20 -1.0
4,517,374 + Psest_4317 0.22 -0.0
4,517,463 + Psest_4317 0.31 -0.8
4,517,463 + Psest_4317 0.31 +0.2
4,517,463 + Psest_4317 0.31 -1.8
4,517,463 + Psest_4317 0.31 -2.6
4,517,463 + Psest_4317 0.31 +0.1
4,517,463 + Psest_4317 0.31 +0.5
4,517,463 + Psest_4317 0.31 -0.5
4,517,463 + Psest_4317 0.31 +0.1
4,517,463 + Psest_4317 0.31 -1.8
4,517,463 + Psest_4317 0.31 +1.4
4,517,464 - Psest_4317 0.31 +0.7
4,517,464 - Psest_4317 0.31 +1.3
4,517,464 - Psest_4317 0.31 +0.2
4,517,464 - Psest_4317 0.31 -0.5
4,517,464 - Psest_4317 0.31 +0.3
4,517,464 - Psest_4317 0.31 +0.5
4,517,464 - Psest_4317 0.31 -0.8
4,517,464 - Psest_4317 0.31 -0.5
4,517,464 - Psest_4317 0.31 +0.8
4,517,464 - Psest_4317 0.31 -0.1
4,517,581 - Psest_4317 0.43 -1.1
4,517,620 + Psest_4317 0.47 -0.2
4,517,621 - Psest_4317 0.47 -3.1
4,517,643 + Psest_4317 0.49 +0.6
4,517,644 - Psest_4317 0.49 +0.0
4,517,781 + Psest_4317 0.63 -1.9
4,517,781 + Psest_4317 0.63 -1.0
4,517,781 + Psest_4317 0.63 -2.9
4,517,782 - Psest_4317 0.63 -3.5
4,517,782 - Psest_4317 0.63 +1.1
4,517,859 + Psest_4317 0.71 -0.8
4,517,860 - Psest_4317 0.71 -1.0
4,518,122 + +0.4
4,518,207 + +1.0
4,518,207 + -2.4
4,518,208 - +1.0
4,518,208 - +0.4
4,518,242 + -0.1
4,518,242 + -1.2
4,518,242 + -1.7
4,518,242 + -0.3
4,518,242 + -1.5
4,518,242 + +0.5
4,518,243 - -0.5
4,518,243 - +2.3
4,518,243 - +0.2
4,518,243 - -1.2
4,518,243 - +1.0
4,518,243 - -2.9
4,518,243 - +0.4
4,518,243 - -0.6
4,518,306 + Psest_4318 0.15 -1.3
4,518,306 + Psest_4318 0.15 -0.5
4,518,307 - Psest_4318 0.15 -1.1
4,518,382 + Psest_4318 0.33 -2.0
4,518,383 - Psest_4318 0.33 -1.4
4,518,383 - Psest_4318 0.33 -0.4
4,518,383 - Psest_4318 0.33 -1.3
4,518,455 - Psest_4318 0.50 -0.5
4,518,552 + Psest_4318 0.73 -2.4
4,518,552 + Psest_4318 0.73 +0.5
4,518,552 + Psest_4318 0.73 -2.5
4,518,553 - Psest_4318 0.73 +2.2
4,518,715 + -2.6
4,518,715 + -1.4
4,518,716 - -0.3
4,518,716 - -0.9
4,518,716 - -0.4
4,518,716 - -1.0
4,518,716 - -2.4
4,518,716 - -1.5
4,518,716 - +2.0
4,518,716 - +1.3
4,518,716 - -0.0
4,518,716 - -0.5
4,518,716 - -0.8
4,518,716 - -1.0
4,518,730 + Psest_4319 0.10 -0.0
4,518,731 - Psest_4319 0.10 -0.9
4,518,731 - Psest_4319 0.10 +1.0
4,518,793 + Psest_4319 0.22 +0.8
4,518,793 + Psest_4319 0.22 -0.8
4,518,793 + Psest_4319 0.22 -2.0
4,518,793 + Psest_4319 0.22 -0.2
4,518,793 + Psest_4319 0.22 +0.7
4,518,793 + Psest_4319 0.22 -0.3
4,518,793 + Psest_4319 0.22 -0.3
4,518,794 - Psest_4319 0.22 +1.1
4,518,997 + Psest_4319 0.60 -1.2
4,519,214 + -0.6
4,519,215 - -0.8
4,519,215 - +0.3
4,519,248 + +2.0
4,519,248 + -2.1
4,519,248 + -1.4
4,519,248 + -0.7
4,519,248 + +0.5
4,519,248 + -1.1
4,519,249 - +0.1
4,519,249 - -1.2
4,519,249 - -0.2
4,519,252 + -1.7
4,519,252 + -0.6
4,519,252 + -0.0
4,519,252 + +0.8
4,519,252 + +0.3
4,519,252 + -0.7
4,519,252 + +0.4
4,519,252 + +0.2
4,519,253 - -1.4
4,519,253 - +2.0
4,519,253 - +0.8
4,519,317 + -2.1
4,519,321 + -1.9
4,519,388 + -0.4
4,519,388 + -0.4
4,519,388 + -0.4
4,519,389 - +0.2
4,519,389 - +1.1
4,519,516 - -0.4

Or see this region's nucleotide sequence