Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4303 and Psest_4304 overlap by 4 nucleotides Psest_4304 and Psest_4305 are separated by 192 nucleotides
Psest_4303: Psest_4303 - HEAT repeat., at 4,500,815 to 4,501,852
_4303
Psest_4304: Psest_4304 - Glycosyltransferases, probably involved in cell wall biogenesis, at 4,501,849 to 4,503,249
_4304
Psest_4305: Psest_4305 - NAD-dependent aldehyde dehydrogenases, at 4,503,442 to 4,504,935
_4305
Position (kb)
4501
4502
4503
4504 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4500.858 kb on + strand at 4500.858 kb on + strand at 4500.871 kb on - strand at 4500.882 kb on + strand at 4500.882 kb on + strand at 4500.882 kb on + strand at 4500.883 kb on - strand at 4500.954 kb on - strand, within Psest_4303 at 4501.224 kb on + strand, within Psest_4303 at 4501.894 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.918 kb on + strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.919 kb on - strand at 4501.960 kb on + strand at 4501.960 kb on + strand at 4501.960 kb on + strand at 4501.960 kb on + strand at 4501.999 kb on + strand, within Psest_4304 at 4502.030 kb on + strand, within Psest_4304 at 4502.031 kb on - strand, within Psest_4304 at 4502.233 kb on + strand, within Psest_4304 at 4502.233 kb on + strand, within Psest_4304 at 4502.234 kb on - strand, within Psest_4304 at 4502.234 kb on - strand, within Psest_4304 at 4502.387 kb on + strand, within Psest_4304 at 4502.387 kb on + strand, within Psest_4304 at 4502.463 kb on - strand, within Psest_4304 at 4502.530 kb on + strand, within Psest_4304 at 4502.531 kb on - strand, within Psest_4304 at 4502.656 kb on - strand, within Psest_4304 at 4502.986 kb on + strand, within Psest_4304 at 4503.082 kb on + strand, within Psest_4304 at 4503.082 kb on + strand, within Psest_4304 at 4503.082 kb on + strand, within Psest_4304 at 4503.082 kb on + strand, within Psest_4304 at 4503.247 kb on + strand at 4503.333 kb on - strand at 4503.476 kb on + strand at 4503.476 kb on + strand at 4503.476 kb on + strand at 4503.476 kb on + strand at 4503.476 kb on + strand at 4503.476 kb on + strand at 4503.477 kb on - strand at 4503.477 kb on - strand at 4503.791 kb on + strand, within Psest_4305 at 4503.791 kb on + strand, within Psest_4305 at 4503.791 kb on + strand, within Psest_4305 at 4503.791 kb on + strand, within Psest_4305 at 4503.791 kb on + strand, within Psest_4305 at 4503.792 kb on - strand, within Psest_4305 at 4503.792 kb on - strand, within Psest_4305 at 4503.792 kb on - strand at 4503.792 kb on - strand, within Psest_4305 at 4503.792 kb on - strand, within Psest_4305 at 4503.792 kb on - strand, within Psest_4305 at 4503.869 kb on + strand, within Psest_4305 at 4503.870 kb on - strand, within Psest_4305 at 4503.870 kb on - strand, within Psest_4305 at 4503.870 kb on - strand, within Psest_4305 at 4504.172 kb on + strand, within Psest_4305 at 4504.172 kb on + strand, within Psest_4305 at 4504.173 kb on - strand, within Psest_4305 at 4504.173 kb on - strand, within Psest_4305 at 4504.173 kb on - strand, within Psest_4305
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 4,500,858 + -0.6 4,500,858 + +0.4 4,500,871 - -0.7 4,500,882 + +0.4 4,500,882 + +2.0 4,500,882 + -2.7 4,500,883 - -0.8 4,500,954 - Psest_4303 0.13 -1.6 4,501,224 + Psest_4303 0.39 -0.0 4,501,894 + -2.1 4,501,918 + -2.2 4,501,918 + -0.4 4,501,918 + +1.2 4,501,918 + +0.0 4,501,918 + -0.6 4,501,918 + +1.4 4,501,918 + -0.0 4,501,918 + -0.0 4,501,918 + +2.0 4,501,918 + -1.7 4,501,918 + +2.5 4,501,918 + +0.6 4,501,918 + +1.0 4,501,919 - +2.5 4,501,919 - +0.4 4,501,919 - +0.8 4,501,919 - -0.6 4,501,919 - -0.0 4,501,919 - +0.4 4,501,919 - -0.4 4,501,919 - -0.8 4,501,919 - +0.4 4,501,919 - +1.0 4,501,919 - +2.0 4,501,919 - +1.0 4,501,919 - +2.0 4,501,919 - -0.0 4,501,919 - -1.9 4,501,919 - -0.4 4,501,960 + -0.4 4,501,960 + -0.7 4,501,960 + -0.0 4,501,960 + +1.2 4,501,999 + Psest_4304 0.11 -1.0 4,502,030 + Psest_4304 0.13 -1.5 4,502,031 - Psest_4304 0.13 -0.4 4,502,233 + Psest_4304 0.27 +0.4 4,502,233 + Psest_4304 0.27 -1.6 4,502,234 - Psest_4304 0.27 +3.3 4,502,234 - Psest_4304 0.27 -3.2 4,502,387 + Psest_4304 0.38 +0.5 4,502,387 + Psest_4304 0.38 -0.0 4,502,463 - Psest_4304 0.44 -0.1 4,502,530 + Psest_4304 0.49 -0.8 4,502,531 - Psest_4304 0.49 +1.4 4,502,656 - Psest_4304 0.58 -0.7 4,502,986 + Psest_4304 0.81 -0.6 4,503,082 + Psest_4304 0.88 +2.0 4,503,082 + Psest_4304 0.88 +0.2 4,503,082 + Psest_4304 0.88 -0.6 4,503,082 + Psest_4304 0.88 +2.0 4,503,247 + +0.4 4,503,333 - +0.1 4,503,476 + -0.4 4,503,476 + +0.5 4,503,476 + +2.4 4,503,476 + -1.2 4,503,476 + -0.6 4,503,476 + -0.0 4,503,477 - +1.0 4,503,477 - -0.0 4,503,791 + Psest_4305 0.23 -0.0 4,503,791 + Psest_4305 0.23 -1.7 4,503,791 + Psest_4305 0.23 +2.0 4,503,791 + Psest_4305 0.23 +0.4 4,503,791 + Psest_4305 0.23 +0.4 4,503,792 - Psest_4305 0.23 +1.0 4,503,792 - Psest_4305 0.23 -1.5 4,503,792 - +2.0 4,503,792 - Psest_4305 0.23 -0.8 4,503,792 - Psest_4305 0.23 -1.6 4,503,792 - Psest_4305 0.23 -1.7 4,503,869 + Psest_4305 0.29 -1.4 4,503,870 - Psest_4305 0.29 +1.0 4,503,870 - Psest_4305 0.29 -0.0 4,503,870 - Psest_4305 0.29 +1.0 4,504,172 + Psest_4305 0.49 +2.0 4,504,172 + Psest_4305 0.49 +2.0 4,504,173 - Psest_4305 0.49 -0.0 4,504,173 - Psest_4305 0.49 -0.6 4,504,173 - Psest_4305 0.49 +3.0
Or see this region's nucleotide sequence