Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_407 and HP15_408 are separated by 57 nucleotides HP15_408 and HP15_409 are separated by 459 nucleotides
HP15_407: HP15_407 - transporter, major facilitator family, at 402,929 to 404,299
_407
HP15_408: HP15_408 - single-stranded DNA-binding protein, at 404,357 to 404,881
_408
HP15_409: HP15_409 - hypothetical biogenesis protein MshI-like protein, at 405,341 to 406,048
_409
Position (kb) 404
405 Strain fitness (log2 ratio) -1
0
1 at 403.395 kb on + strand, within HP15_407 at 403.425 kb on + strand, within HP15_407 at 403.523 kb on + strand, within HP15_407 at 403.533 kb on - strand, within HP15_407 at 403.595 kb on - strand, within HP15_407 at 403.743 kb on + strand, within HP15_407 at 403.808 kb on + strand, within HP15_407 at 403.930 kb on + strand, within HP15_407 at 403.965 kb on - strand, within HP15_407 at 403.970 kb on + strand, within HP15_407 at 404.031 kb on + strand, within HP15_407 at 404.220 kb on + strand at 404.343 kb on + strand at 405.149 kb on + strand at 405.163 kb on + strand at 405.171 kb on - strand at 405.171 kb on - strand at 405.240 kb on - strand at 405.332 kb on - strand at 405.337 kb on - strand at 405.356 kb on - strand at 405.356 kb on - strand at 405.412 kb on - strand, within HP15_409 at 405.465 kb on - strand, within HP15_409 at 405.528 kb on - strand, within HP15_409 at 405.663 kb on + strand, within HP15_409 at 405.754 kb on - strand, within HP15_409 at 405.756 kb on + strand, within HP15_409 at 405.756 kb on + strand, within HP15_409 at 405.864 kb on - strand, within HP15_409
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 403,395 + HP15_407 0.34 +0.5 403,425 + HP15_407 0.36 -0.2 403,523 + HP15_407 0.43 +0.1 403,533 - HP15_407 0.44 +0.1 403,595 - HP15_407 0.49 -1.3 403,743 + HP15_407 0.59 -0.7 403,808 + HP15_407 0.64 -1.1 403,930 + HP15_407 0.73 -0.5 403,965 - HP15_407 0.76 -0.2 403,970 + HP15_407 0.76 -0.1 404,031 + HP15_407 0.80 +0.6 404,220 + -0.3 404,343 + +1.0 405,149 + +0.8 405,163 + -1.0 405,171 - -1.1 405,171 - -0.6 405,240 - -0.8 405,332 - -0.6 405,337 - +0.0 405,356 - +0.8 405,356 - -0.1 405,412 - HP15_409 0.10 -0.5 405,465 - HP15_409 0.18 +0.4 405,528 - HP15_409 0.26 +1.1 405,663 + HP15_409 0.45 -1.0 405,754 - HP15_409 0.58 +0.1 405,756 + HP15_409 0.59 -0.9 405,756 + HP15_409 0.59 -0.9 405,864 - HP15_409 0.74 +0.6
Or see this region's nucleotide sequence