Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3959 and HP15_3960 are separated by 63 nucleotides HP15_3960 and HP15_3961 are separated by 217 nucleotides HP15_3961 and HP15_3962 overlap by 4 nucleotides
HP15_3959: HP15_3959 - cytochrome B561, at 4,189,431 to 4,189,955
_3959
HP15_3960: HP15_3960 - secreted protein, at 4,190,019 to 4,190,372
_3960
HP15_3961: HP15_3961 - two-component transcriptional regulator, winged helix family, at 4,190,590 to 4,191,315
_3961
HP15_3962: HP15_3962 - two-component system sensor histidine kinase, at 4,191,312 to 4,192,730
_3962
Position (kb)
4190
4191
4192 Strain fitness (log2 ratio)
-2
-1
0
1 at 4189.688 kb on + strand, within HP15_3959 at 4189.701 kb on - strand, within HP15_3959 at 4189.757 kb on - strand, within HP15_3959 at 4189.766 kb on + strand, within HP15_3959 at 4189.790 kb on + strand, within HP15_3959 at 4189.917 kb on - strand at 4189.924 kb on + strand at 4190.022 kb on + strand at 4190.055 kb on - strand, within HP15_3960 at 4190.328 kb on - strand, within HP15_3960 at 4190.398 kb on - strand at 4190.467 kb on + strand at 4190.475 kb on - strand at 4190.487 kb on - strand at 4190.557 kb on + strand at 4190.644 kb on - strand at 4190.751 kb on + strand, within HP15_3961 at 4190.797 kb on - strand, within HP15_3961 at 4190.829 kb on + strand, within HP15_3961 at 4190.911 kb on - strand, within HP15_3961 at 4190.951 kb on + strand, within HP15_3961 at 4190.986 kb on + strand, within HP15_3961 at 4191.056 kb on + strand, within HP15_3961 at 4191.056 kb on + strand, within HP15_3961 at 4191.101 kb on + strand, within HP15_3961 at 4191.148 kb on + strand, within HP15_3961 at 4191.242 kb on + strand, within HP15_3961 at 4191.242 kb on + strand, within HP15_3961 at 4191.250 kb on - strand at 4191.252 kb on + strand at 4191.334 kb on + strand at 4191.383 kb on + strand at 4191.391 kb on - strand at 4191.472 kb on + strand, within HP15_3962 at 4191.472 kb on + strand, within HP15_3962 at 4191.472 kb on + strand, within HP15_3962 at 4191.480 kb on - strand, within HP15_3962 at 4191.480 kb on - strand, within HP15_3962 at 4191.480 kb on - strand, within HP15_3962 at 4191.626 kb on - strand, within HP15_3962 at 4191.632 kb on - strand, within HP15_3962 at 4191.806 kb on + strand, within HP15_3962 at 4192.194 kb on + strand, within HP15_3962 at 4192.231 kb on - strand, within HP15_3962 at 4192.263 kb on - strand, within HP15_3962 at 4192.279 kb on + strand, within HP15_3962 at 4192.279 kb on + strand, within HP15_3962
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 4,189,688 + HP15_3959 0.49 +0.4 4,189,701 - HP15_3959 0.51 +0.1 4,189,757 - HP15_3959 0.62 +0.2 4,189,766 + HP15_3959 0.64 -0.1 4,189,790 + HP15_3959 0.68 -0.3 4,189,917 - -1.0 4,189,924 + +0.0 4,190,022 + -0.9 4,190,055 - HP15_3960 0.10 +0.5 4,190,328 - HP15_3960 0.87 -1.2 4,190,398 - +0.0 4,190,467 + -0.1 4,190,475 - +0.3 4,190,487 - -0.3 4,190,557 + +0.1 4,190,644 - -1.3 4,190,751 + HP15_3961 0.22 +0.4 4,190,797 - HP15_3961 0.29 -1.1 4,190,829 + HP15_3961 0.33 -1.0 4,190,911 - HP15_3961 0.44 -0.9 4,190,951 + HP15_3961 0.50 -1.7 4,190,986 + HP15_3961 0.55 -0.2 4,191,056 + HP15_3961 0.64 -0.0 4,191,056 + HP15_3961 0.64 -0.1 4,191,101 + HP15_3961 0.70 +0.1 4,191,148 + HP15_3961 0.77 -0.6 4,191,242 + HP15_3961 0.90 -0.2 4,191,242 + HP15_3961 0.90 -1.0 4,191,250 - -0.6 4,191,252 + +0.4 4,191,334 + -1.2 4,191,383 + -1.2 4,191,391 - -2.4 4,191,472 + HP15_3962 0.11 -1.6 4,191,472 + HP15_3962 0.11 -1.1 4,191,472 + HP15_3962 0.11 -1.5 4,191,480 - HP15_3962 0.12 -2.0 4,191,480 - HP15_3962 0.12 -0.0 4,191,480 - HP15_3962 0.12 +0.9 4,191,626 - HP15_3962 0.22 -1.0 4,191,632 - HP15_3962 0.23 -1.0 4,191,806 + HP15_3962 0.35 -1.5 4,192,194 + HP15_3962 0.62 -1.2 4,192,231 - HP15_3962 0.65 -0.1 4,192,263 - HP15_3962 0.67 -0.8 4,192,279 + HP15_3962 0.68 +0.1 4,192,279 + HP15_3962 0.68 +0.5
Or see this region's nucleotide sequence