Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0035 and Psest_0036 overlap by 22 nucleotides Psest_0036 and Psest_0037 are separated by 183 nucleotides
Psest_0035: Psest_0035 - hypothetical protein, at 35,413 to 36,939
_0035
Psest_0036: Psest_0036 - Predicted membrane protein, at 36,918 to 38,621
_0036
Psest_0037: Psest_0037 - trehalose synthase, Pseudomonas stutzeri type, at 38,805 to 40,874
_0037
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 36.040 kb on + strand, within Psest_0035 at 36.041 kb on - strand, within Psest_0035 at 36.041 kb on - strand, within Psest_0035 at 36.303 kb on - strand, within Psest_0035 at 36.303 kb on - strand, within Psest_0035 at 36.410 kb on - strand, within Psest_0035 at 36.574 kb on + strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.578 kb on - strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.602 kb on - strand, within Psest_0035 at 37.064 kb on - strand at 37.064 kb on - strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.079 kb on - strand at 37.079 kb on - strand at 37.262 kb on - strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.531 kb on + strand, within Psest_0036 at 37.531 kb on + strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.571 kb on - strand, within Psest_0036 at 37.576 kb on + strand, within Psest_0036 at 37.577 kb on - strand, within Psest_0036 at 37.615 kb on + strand, within Psest_0036 at 37.615 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.655 kb on - strand, within Psest_0036 at 37.655 kb on - strand, within Psest_0036 at 37.660 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 38.038 kb on + strand, within Psest_0036 at 38.203 kb on + strand, within Psest_0036 at 38.256 kb on + strand, within Psest_0036 at 38.257 kb on - strand, within Psest_0036 at 38.257 kb on - strand, within Psest_0036 at 38.429 kb on - strand, within Psest_0036 at 38.771 kb on - strand at 38.771 kb on - strand at 38.771 kb on - strand at 38.822 kb on + strand at 38.822 kb on + strand at 38.822 kb on + strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.823 kb on - strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.826 kb on + strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.827 kb on - strand at 38.919 kb on + strand at 39.307 kb on - strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.441 kb on + strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.442 kb on - strand, within Psest_0037 at 39.555 kb on + strand, within Psest_0037 at 39.555 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.564 kb on + strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037 at 39.565 kb on - strand, within Psest_0037
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 36,040 + Psest_0035 0.41 +1.0 36,041 - Psest_0035 0.41 +0.4 36,041 - Psest_0035 0.41 +0.4 36,303 - Psest_0035 0.58 -1.3 36,303 - Psest_0035 0.58 +1.1 36,410 - Psest_0035 0.65 +1.0 36,574 + Psest_0035 0.76 +1.0 36,575 - Psest_0035 0.76 +0.4 36,575 - Psest_0035 0.76 +2.0 36,575 - Psest_0035 0.76 +1.0 36,578 - Psest_0035 0.76 -0.0 36,601 + Psest_0035 0.78 +3.2 36,601 + Psest_0035 0.78 -0.0 36,601 + Psest_0035 0.78 -1.6 36,602 - Psest_0035 0.78 -1.0 37,064 - -0.3 37,064 - -1.1 37,078 + -2.0 37,078 + -0.8 37,078 + -0.0 37,078 + +0.4 37,078 + +0.2 37,078 + +0.2 37,078 + +0.8 37,078 + +0.4 37,079 - +2.3 37,079 - +1.2 37,262 - Psest_0036 0.20 -0.0 37,270 + Psest_0036 0.21 -0.0 37,270 + Psest_0036 0.21 +0.7 37,270 + Psest_0036 0.21 -0.6 37,270 + Psest_0036 0.21 -1.0 37,270 + Psest_0036 0.21 -2.5 37,270 + Psest_0036 0.21 +0.1 37,271 - Psest_0036 0.21 -0.3 37,271 - Psest_0036 0.21 +0.7 37,271 - Psest_0036 0.21 +0.4 37,531 + Psest_0036 0.36 -0.8 37,531 + Psest_0036 0.36 -0.5 37,532 - Psest_0036 0.36 +2.0 37,532 - Psest_0036 0.36 -1.1 37,532 - Psest_0036 0.36 +0.4 37,571 - Psest_0036 0.38 -1.2 37,576 + Psest_0036 0.39 +2.0 37,577 - Psest_0036 0.39 -0.0 37,615 + Psest_0036 0.41 +0.8 37,615 + Psest_0036 0.41 +1.4 37,654 + Psest_0036 0.43 -1.8 37,654 + Psest_0036 0.43 -1.6 37,654 + Psest_0036 0.43 +2.0 37,655 - Psest_0036 0.43 -2.4 37,655 - Psest_0036 0.43 -0.5 37,660 + Psest_0036 0.44 -1.6 37,855 + Psest_0036 0.55 -1.0 37,855 + Psest_0036 0.55 -2.6 37,855 + Psest_0036 0.55 +0.7 38,038 + Psest_0036 0.66 -0.0 38,203 + Psest_0036 0.75 -0.6 38,256 + Psest_0036 0.79 -1.0 38,257 - Psest_0036 0.79 -1.2 38,257 - Psest_0036 0.79 -1.3 38,429 - Psest_0036 0.89 -0.8 38,771 - -0.3 38,771 - -1.0 38,771 - +0.1 38,822 + -0.6 38,822 + -0.8 38,822 + +2.0 38,823 - -0.9 38,823 - +1.0 38,823 - -1.0 38,823 - +1.0 38,823 - -0.8 38,823 - -0.8 38,823 - -0.5 38,823 - +1.0 38,823 - -0.3 38,823 - -0.0 38,823 - -2.0 38,823 - +0.4 38,823 - +0.6 38,826 + -1.8 38,826 + -0.6 38,826 + -0.0 38,826 + -1.6 38,826 + -1.1 38,826 + -3.8 38,826 + +1.0 38,826 + -2.4 38,826 + -1.5 38,826 + -1.6 38,826 + -0.6 38,826 + +0.4 38,826 + -0.1 38,826 + -1.1 38,826 + -0.0 38,826 + -2.1 38,826 + -0.8 38,827 - +1.6 38,827 - +1.0 38,827 - -1.5 38,827 - +1.3 38,827 - -1.6 38,827 - -0.0 38,827 - +3.3 38,827 - +0.2 38,827 - -0.6 38,827 - -0.3 38,827 - -0.7 38,827 - +0.4 38,827 - -0.8 38,827 - -1.8 38,827 - +1.0 38,827 - -0.8 38,827 - -1.0 38,827 - -1.2 38,827 - +0.4 38,827 - -1.2 38,827 - -1.0 38,827 - -0.0 38,827 - -2.7 38,827 - +2.0 38,827 - -0.3 38,827 - -0.3 38,827 - +1.0 38,827 - +0.8 38,827 - +1.7 38,827 - +2.4 38,827 - +1.0 38,827 - -1.1 38,827 - +1.0 38,827 - -0.3 38,827 - -0.8 38,827 - +2.0 38,827 - +1.1 38,827 - -0.0 38,827 - -0.1 38,827 - -2.3 38,827 - -1.5 38,919 + -2.9 39,307 - Psest_0037 0.24 -1.3 39,441 + Psest_0037 0.31 +0.3 39,441 + Psest_0037 0.31 +0.6 39,441 + Psest_0037 0.31 -1.0 39,441 + Psest_0037 0.31 -0.0 39,441 + Psest_0037 0.31 +1.0 39,441 + Psest_0037 0.31 +2.0 39,441 + Psest_0037 0.31 -1.6 39,441 + Psest_0037 0.31 -1.0 39,441 + Psest_0037 0.31 -0.9 39,441 + Psest_0037 0.31 -0.6 39,441 + Psest_0037 0.31 -0.2 39,441 + Psest_0037 0.31 -0.6 39,442 - Psest_0037 0.31 +1.0 39,442 - Psest_0037 0.31 -2.3 39,442 - Psest_0037 0.31 -2.8 39,442 - Psest_0037 0.31 -0.0 39,442 - Psest_0037 0.31 -2.8 39,442 - Psest_0037 0.31 -0.2 39,555 + Psest_0037 0.36 -0.0 39,555 + Psest_0037 0.36 -1.1 39,564 + Psest_0037 0.37 +0.4 39,564 + Psest_0037 0.37 -1.6 39,564 + Psest_0037 0.37 +0.4 39,565 - Psest_0037 0.37 -0.3 39,565 - Psest_0037 0.37 -1.0 39,565 - Psest_0037 0.37 -1.5 39,565 - Psest_0037 0.37 -1.7 39,565 - Psest_0037 0.37 -1.9 39,565 - Psest_0037 0.37 -1.2 39,565 - Psest_0037 0.37 -0.3
Or see this region's nucleotide sequence