Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3636

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3635 and Psest_3636 are separated by 170 nucleotidesPsest_3636 and Psest_3637 are separated by 2 nucleotides Psest_3635: Psest_3635 - tyrosyl-tRNA synthetase, at 3,796,389 to 3,797,594 _3635 Psest_3636: Psest_3636 - Membrane proteins related to metalloendopeptidases, at 3,797,765 to 3,799,174 _3636 Psest_3637: Psest_3637 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 3,799,177 to 3,800,268 _3637 Position (kb) 3797 3798 3799 3800Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3797.605 kb on - strandat 3797.605 kb on - strandat 3797.607 kb on - strandat 3797.607 kb on - strandat 3797.607 kb on - strandat 3797.613 kb on - strandat 3797.632 kb on - strandat 3797.632 kb on - strandat 3797.632 kb on - strandat 3797.715 kb on + strandat 3797.730 kb on + strandat 3799.186 kb on + strandat 3799.248 kb on + strandat 3799.378 kb on - strand, within Psest_3637at 3799.406 kb on + strand, within Psest_3637at 3799.833 kb on - strand, within Psest_3637at 3799.943 kb on + strand, within Psest_3637at 3799.943 kb on + strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3799.944 kb on - strand, within Psest_3637at 3800.042 kb on + strand, within Psest_3637at 3800.043 kb on - strand, within Psest_3637at 3800.043 kb on - strand, within Psest_3637at 3800.062 kb on - strand, within Psest_3637at 3800.112 kb on - strand, within Psest_3637at 3800.151 kb on - strand, within Psest_3637

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,797,605 - -1.0
3,797,605 - +1.3
3,797,607 - +1.1
3,797,607 - +1.7
3,797,607 - +2.4
3,797,613 - +2.3
3,797,632 - +1.3
3,797,632 - -0.2
3,797,632 - -0.1
3,797,715 + +0.9
3,797,730 + -1.1
3,799,186 + +1.8
3,799,248 + +2.3
3,799,378 - Psest_3637 0.18 -1.8
3,799,406 + Psest_3637 0.21 +1.5
3,799,833 - Psest_3637 0.60 +0.7
3,799,943 + Psest_3637 0.70 +3.6
3,799,943 + Psest_3637 0.70 +1.9
3,799,944 - Psest_3637 0.70 +0.5
3,799,944 - Psest_3637 0.70 +0.5
3,799,944 - Psest_3637 0.70 +1.1
3,799,944 - Psest_3637 0.70 +2.5
3,799,944 - Psest_3637 0.70 +2.5
3,800,042 + Psest_3637 0.79 +3.3
3,800,043 - Psest_3637 0.79 +0.9
3,800,043 - Psest_3637 0.79 +1.9
3,800,062 - Psest_3637 0.81 +1.0
3,800,112 - Psest_3637 0.86 +1.7
3,800,151 - Psest_3637 0.89 +2.9

Or see this region's nucleotide sequence