Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_338 and HP15_339 overlap by 4 nucleotides HP15_339 and HP15_340 are separated by 59 nucleotides HP15_340 and HP15_341 are separated by 136 nucleotides HP15_341 and HP15_342 are separated by 31 nucleotides HP15_342 and HP15_343 are separated by 10 nucleotides
HP15_338: HP15_338 - penicillin-binding protein 1B, at 333,669 to 335,909
_338
HP15_339: HP15_339 - conserved hypothetical protein, secreted, at 335,906 to 336,502
_339
HP15_340: HP15_340 - lipoprotein, at 336,562 to 337,497
_340
HP15_341: HP15_341 - hypothetical protein, at 337,634 to 337,741
_341
HP15_342: HP15_342 - RNA polymerase sigma factor SigE, at 337,773 to 338,309
_342
HP15_343: HP15_343 - transmembrane anti-sigma factor, at 338,320 to 339,021
_343
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.576 kb on + strand, within HP15_338 at 335.576 kb on - strand, within HP15_338 at 335.615 kb on + strand, within HP15_338 at 335.623 kb on - strand, within HP15_338 at 335.782 kb on + strand at 335.784 kb on + strand at 335.803 kb on + strand at 335.928 kb on + strand at 335.936 kb on - strand at 335.941 kb on - strand at 336.161 kb on - strand, within HP15_339 at 336.196 kb on + strand, within HP15_339 at 336.414 kb on - strand, within HP15_339 at 336.454 kb on - strand at 336.465 kb on + strand at 336.528 kb on + strand at 336.548 kb on + strand at 336.552 kb on + strand at 336.612 kb on + strand at 336.612 kb on + strand at 336.620 kb on - strand at 336.727 kb on + strand, within HP15_340 at 336.732 kb on + strand, within HP15_340 at 336.801 kb on + strand, within HP15_340 at 336.809 kb on - strand, within HP15_340 at 336.810 kb on - strand, within HP15_340 at 336.817 kb on + strand, within HP15_340 at 336.848 kb on + strand, within HP15_340 at 336.933 kb on + strand, within HP15_340 at 336.986 kb on + strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 336.994 kb on - strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.020 kb on + strand, within HP15_340 at 337.028 kb on - strand, within HP15_340 at 337.063 kb on - strand, within HP15_340 at 337.242 kb on - strand, within HP15_340 at 337.277 kb on - strand, within HP15_340 at 337.351 kb on + strand, within HP15_340 at 337.351 kb on + strand, within HP15_340 at 337.402 kb on - strand, within HP15_340 at 337.436 kb on + strand at 337.517 kb on + strand at 337.670 kb on - strand, within HP15_341 at 337.692 kb on + strand, within HP15_341 at 337.768 kb on + strand at 337.780 kb on - strand at 337.887 kb on - strand, within HP15_342 at 338.050 kb on + strand, within HP15_342 at 338.190 kb on + strand, within HP15_342 at 338.228 kb on + strand, within HP15_342 at 338.303 kb on + strand at 338.363 kb on + strand at 338.435 kb on + strand, within HP15_343 at 338.487 kb on + strand, within HP15_343
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 335,576 + HP15_338 0.85 -0.3 335,576 - HP15_338 0.85 +0.0 335,615 + HP15_338 0.87 -0.3 335,623 - HP15_338 0.87 -0.8 335,782 + -0.1 335,784 + -0.4 335,803 + -0.5 335,928 + -0.8 335,936 - -0.3 335,941 - -0.2 336,161 - HP15_339 0.43 +0.9 336,196 + HP15_339 0.49 +0.4 336,414 - HP15_339 0.85 -1.0 336,454 - -0.5 336,465 + +0.4 336,528 + -0.7 336,548 + -0.5 336,552 + -0.9 336,612 + +0.4 336,612 + -1.2 336,620 - +0.0 336,727 + HP15_340 0.18 +0.7 336,732 + HP15_340 0.18 +0.3 336,801 + HP15_340 0.26 +0.9 336,809 - HP15_340 0.26 +0.9 336,810 - HP15_340 0.26 +0.8 336,817 + HP15_340 0.27 -0.2 336,848 + HP15_340 0.31 +1.2 336,933 + HP15_340 0.40 +0.4 336,986 + HP15_340 0.45 +0.5 336,994 - HP15_340 0.46 -0.8 336,994 - HP15_340 0.46 +0.8 336,994 - HP15_340 0.46 +1.8 337,020 + HP15_340 0.49 +1.2 337,020 + HP15_340 0.49 -0.3 337,020 + HP15_340 0.49 +0.8 337,020 + HP15_340 0.49 +0.6 337,028 - HP15_340 0.50 +0.2 337,063 - HP15_340 0.54 +0.5 337,242 - HP15_340 0.73 -0.8 337,277 - HP15_340 0.76 +0.1 337,351 + HP15_340 0.84 +0.5 337,351 + HP15_340 0.84 +0.2 337,402 - HP15_340 0.90 +1.0 337,436 + +0.6 337,517 + +1.0 337,670 - HP15_341 0.33 +0.8 337,692 + HP15_341 0.54 +0.7 337,768 + -0.9 337,780 - -2.0 337,887 - HP15_342 0.21 -1.2 338,050 + HP15_342 0.52 +0.3 338,190 + HP15_342 0.78 -2.4 338,228 + HP15_342 0.85 +0.9 338,303 + +0.1 338,363 + -0.6 338,435 + HP15_343 0.16 -0.5 338,487 + HP15_343 0.24 -0.9
Or see this region's nucleotide sequence