Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3304 and HP15_3305 overlap by 1 nucleotides HP15_3305 and HP15_3306 overlap by 4 nucleotides HP15_3306 and HP15_3307 are separated by 82 nucleotides HP15_3307 and HP15_3308 are separated by 265 nucleotides
HP15_3304: HP15_3304 - molybdenum ABC transporter, periplasmic binding protein, at 3,461,830 to 3,462,633
_3304
HP15_3305: HP15_3305 - molybdate ABC transporter, inner membrane subunit, at 3,462,633 to 3,463,313
_3305
HP15_3306: HP15_3306 - molybdenum ABC transporter, ATP-binding protein, at 3,463,310 to 3,464,392
_3306
HP15_3307: HP15_3307 - transcriptional regulator, Crp/Fnr family, at 3,464,475 to 3,465,116
_3307
HP15_3308: HP15_3308 - OsmC family protein, at 3,465,382 to 3,465,804
_3308
Position (kb)
3463
3464
3465 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3462.367 kb on + strand, within HP15_3304 at 3462.458 kb on + strand, within HP15_3304 at 3462.466 kb on - strand, within HP15_3304 at 3462.480 kb on - strand, within HP15_3304 at 3462.516 kb on - strand, within HP15_3304 at 3462.675 kb on - strand at 3462.807 kb on + strand, within HP15_3305 at 3462.814 kb on + strand, within HP15_3305 at 3462.850 kb on + strand, within HP15_3305 at 3462.858 kb on - strand, within HP15_3305 at 3462.867 kb on - strand, within HP15_3305 at 3462.877 kb on + strand, within HP15_3305 at 3463.094 kb on - strand, within HP15_3305 at 3463.133 kb on - strand, within HP15_3305 at 3463.179 kb on + strand, within HP15_3305 at 3463.184 kb on - strand, within HP15_3305 at 3463.234 kb on + strand, within HP15_3305 at 3463.244 kb on + strand, within HP15_3305 at 3463.257 kb on + strand at 3463.364 kb on + strand at 3463.367 kb on - strand at 3463.379 kb on - strand at 3463.430 kb on + strand, within HP15_3306 at 3463.442 kb on + strand, within HP15_3306 at 3463.460 kb on + strand, within HP15_3306 at 3463.460 kb on + strand, within HP15_3306 at 3463.468 kb on - strand, within HP15_3306 at 3463.470 kb on + strand, within HP15_3306 at 3463.671 kb on + strand, within HP15_3306 at 3463.671 kb on + strand, within HP15_3306 at 3463.714 kb on + strand, within HP15_3306 at 3463.722 kb on - strand, within HP15_3306 at 3463.722 kb on - strand, within HP15_3306 at 3463.804 kb on + strand, within HP15_3306 at 3463.807 kb on - strand, within HP15_3306 at 3463.856 kb on + strand, within HP15_3306 at 3463.863 kb on - strand, within HP15_3306 at 3463.946 kb on + strand, within HP15_3306 at 3463.946 kb on + strand, within HP15_3306 at 3463.946 kb on + strand, within HP15_3306 at 3463.946 kb on + strand, within HP15_3306 at 3464.076 kb on - strand, within HP15_3306 at 3464.110 kb on + strand, within HP15_3306 at 3464.163 kb on - strand, within HP15_3306 at 3464.187 kb on + strand, within HP15_3306 at 3464.195 kb on - strand, within HP15_3306 at 3464.302 kb on - strand at 3464.306 kb on - strand at 3464.386 kb on - strand at 3464.414 kb on - strand at 3464.465 kb on - strand at 3464.551 kb on + strand, within HP15_3307 at 3464.582 kb on - strand, within HP15_3307 at 3464.666 kb on + strand, within HP15_3307 at 3464.733 kb on - strand, within HP15_3307 at 3464.789 kb on - strand, within HP15_3307 at 3464.809 kb on - strand, within HP15_3307 at 3464.817 kb on + strand, within HP15_3307 at 3464.836 kb on + strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.931 kb on + strand, within HP15_3307 at 3464.980 kb on + strand, within HP15_3307 at 3464.982 kb on + strand, within HP15_3307 at 3465.270 kb on - strand at 3465.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 3,462,367 + HP15_3304 0.67 -1.1 3,462,458 + HP15_3304 0.78 -2.3 3,462,466 - HP15_3304 0.79 -1.3 3,462,480 - HP15_3304 0.81 -2.8 3,462,516 - HP15_3304 0.85 -3.0 3,462,675 - -2.5 3,462,807 + HP15_3305 0.26 -0.9 3,462,814 + HP15_3305 0.27 -1.3 3,462,850 + HP15_3305 0.32 -1.3 3,462,858 - HP15_3305 0.33 -0.9 3,462,867 - HP15_3305 0.34 -0.7 3,462,877 + HP15_3305 0.36 -0.5 3,463,094 - HP15_3305 0.68 -0.9 3,463,133 - HP15_3305 0.73 -0.8 3,463,179 + HP15_3305 0.80 -4.1 3,463,184 - HP15_3305 0.81 -1.2 3,463,234 + HP15_3305 0.88 -1.5 3,463,244 + HP15_3305 0.90 -1.8 3,463,257 + -0.7 3,463,364 + -2.2 3,463,367 - -2.1 3,463,379 - -0.6 3,463,430 + HP15_3306 0.11 -0.6 3,463,442 + HP15_3306 0.12 -2.8 3,463,460 + HP15_3306 0.14 -1.4 3,463,460 + HP15_3306 0.14 -2.7 3,463,468 - HP15_3306 0.15 -1.3 3,463,470 + HP15_3306 0.15 -1.3 3,463,671 + HP15_3306 0.33 -1.2 3,463,671 + HP15_3306 0.33 -2.2 3,463,714 + HP15_3306 0.37 -1.6 3,463,722 - HP15_3306 0.38 -0.9 3,463,722 - HP15_3306 0.38 -0.1 3,463,804 + HP15_3306 0.46 -0.1 3,463,807 - HP15_3306 0.46 -0.3 3,463,856 + HP15_3306 0.50 -1.7 3,463,863 - HP15_3306 0.51 -3.6 3,463,946 + HP15_3306 0.59 -0.8 3,463,946 + HP15_3306 0.59 -2.0 3,463,946 + HP15_3306 0.59 -0.6 3,463,946 + HP15_3306 0.59 -0.6 3,464,076 - HP15_3306 0.71 -0.7 3,464,110 + HP15_3306 0.74 -0.2 3,464,163 - HP15_3306 0.79 -1.0 3,464,187 + HP15_3306 0.81 +0.7 3,464,195 - HP15_3306 0.82 -0.5 3,464,302 - -1.7 3,464,306 - -0.3 3,464,386 - -1.8 3,464,414 - -0.4 3,464,465 - -0.1 3,464,551 + HP15_3307 0.12 +0.1 3,464,582 - HP15_3307 0.17 +0.2 3,464,666 + HP15_3307 0.30 +1.3 3,464,733 - HP15_3307 0.40 -0.9 3,464,789 - HP15_3307 0.49 -1.1 3,464,809 - HP15_3307 0.52 +0.1 3,464,817 + HP15_3307 0.53 +0.4 3,464,836 + HP15_3307 0.56 -0.5 3,464,844 - HP15_3307 0.57 +0.1 3,464,844 - HP15_3307 0.57 +0.5 3,464,844 - HP15_3307 0.57 -0.2 3,464,844 - HP15_3307 0.57 +0.4 3,464,931 + HP15_3307 0.71 +0.9 3,464,980 + HP15_3307 0.79 -0.5 3,464,982 + HP15_3307 0.79 -0.8 3,465,270 - -0.1 3,465,391 + -0.7
Or see this region's nucleotide sequence